Gm50063 Gene Detail

Summary

• Symbol
  Gm50063
• Name
  predicted gene, 50063

• Feature Type
  lncRNA gene
• IDs
  MGI:6275383
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:12775031-12777536 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275383	lncRNA gene	Chr18:12775031-12777536 (-)
129S1/SvImJ	ENSMUSG00200026134	lncRNA gene	Chr18:9708358-9710427 (-)
A/J	ENSMUSG00195009185	lncRNA gene	Chr18:9904392-9906464 (-)
AKR/J	ENSMUSG00220019930	lncRNA gene	Chr18:9898869-9900941 (-)
BALB/cJ	ENSMUSG00180004027	lncRNA gene	Chr18:10353473-10355545 (-)
C3H/HeJ	ENSMUSG00175008285	lncRNA gene	Chr18:9892750-9894822 (-)
C57BL/6NJ	ENSMUSG00215022958	lncRNA gene	Chr18:9614853-9616925 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017443	lncRNA gene	Chr18:9680776-9682843 (-)
CBA/J	ENSMUSG00210022046	lncRNA gene	Chr18:9901580-9903652 (-)
DBA/2J	ENSMUSG00185030434	lncRNA gene	Chr18:9909862-9911934 (-)
FVB/NJ	ENSMUSG00205037689	lncRNA gene	Chr18:9674119-9676191 (-)
JF1/MsJ	ENSUMUG00000041800	lncRNA gene	Chr18:9948176-9950245 (-)
LP/J	ENSMUSG00230012676	lncRNA gene	Chr18:11952629-11954698 (-)
NOD/ShiLtJ	ENSMUSG00190010254	lncRNA gene	Chr18:9674284-9676356 (-)
NZO/HlLtJ	ENSMUSG00225027988	lncRNA gene	Chr18:11891653-11893725 (-)
PWK/PhJ	ENSLUMG00010016194	lncRNA gene	Chr18:10158249-10160318 (-)
SPRET/EiJ	ENSMSPG00010012163	lncRNA gene	Chr18:9833251-9835312 (-)
WSB/EiJ	ENSIUOG00005027911	lncRNA gene	Chr18:9782095-9784167 (-)

Homology

• Gene Tree
  Gm50063
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117418 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117418	Ensembl Gene Model | MGI Sequence Detail	2506	C57BL/6J
transcript	ENSMUST00000234209	Ensembl | MGI Sequence Detail	823	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm50063:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152466	Chr18:12777416-12777433 (-)	111 bp