Gm50059 Pseudogene Detail

Summary

• Symbol
  Gm50059
• Name
  predicted gene, 50059

• Feature Type
  pseudogene
• IDs
  MGI:6275377
  NCBI Gene: 115488812
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:24127210-24131345 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  284 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275377	pseudogene	Chr17:24127168-24131826 (-)
129S1/SvImJ	ENSMUSG00200038929	pseudogene	Chr17:19551662-19555130 (-)
A/J	ENSMUSG00195054436	pseudogene	Chr17:20570435-20573903 (-)
AKR/J	ENSMUSG00220028903	pseudogene	Chr17:19625647-19629133 (-)
BALB/cJ	ENSMUSG00180019994	pseudogene	Chr17:19853517-19856985 (-)
C3H/HeJ	ENSMUSG00175043292	pseudogene	Chr17:19631816-19631863 (-)
C57BL/6NJ	ENSMUSG00215043449	pseudogene	Chr17:19634990-19639125 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023071	pseudogene	Chr17:20207419-20210853 (-)
CBA/J	ENSMUSG00210044676	pseudogene	Chr17:19470631-19470678 (-)
DBA/2J	ENSMUSG00185054124	pseudogene	Chr17:21658843-21662311 (-)
FVB/NJ	ENSMUSG00205037285	pseudogene	Chr17:19921970-19925456 (-)
JF1/MsJ	ENSUMUG00000057548	pseudogene	Chr17:21126787-21130922 (-)
LP/J	ENSMUSG00230055155	pseudogene	Chr17:23056348-23059816 (-)
NOD/ShiLtJ	ENSMUSG00190042595	pseudogene	Chr17:19555122-19558590 (-)
NZO/HlLtJ	ENSMUSG00225054834	pseudogene	Chr17:24977971-24981439 (-)
PWK/PhJ	ENSLUMG00010020805	pseudogene	Chr17:19037519-19041338 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051433	pseudogene	Chr17:20299236-20302704 (-)

Homology

• Gene Tree
  Gm50059
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117403 (Evidence)
• NCBI Gene
  115488812

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117403	Ensembl Gene Model | MGI Sequence Detail	4136	C57BL/6J
transcript	ENSMUST00000234929	Ensembl | MGI Sequence Detail	808	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;