Gm50058 Pseudogene Detail

Summary

• Symbol
  Gm50058
• Name
  predicted gene, 50058

• Feature Type
  pseudogene
• IDs
  MGI:6275376
  NCBI Gene: 115488811
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:24109089-24112562 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  263 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275376	pseudogene	Chr17:24109089-24117497 (-)
129S1/SvImJ	ENSMUSG00200038916	pseudogene	Chr17:19533595-19533752 (-)
A/J	ENSMUSG00195039001	pseudogene	Chr17:20552364-20552521 (-)
AKR/J	ENSMUSG00220028844	pseudogene	Chr17:19607592-19607749 (-)
BALB/cJ	ENSMUSG00180019969	pseudogene	Chr17:19835449-19835606 (-)
C3H/HeJ	ENSMUSG00175043223	pseudogene	Chr17:19614615-19618139 (-)
C57BL/6NJ	ENSMUSG00215043430	pseudogene	Chr17:19616870-19620342 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023058	pseudogene	Chr17:20192505-20192662 (-)
CBA/J	ENSMUSG00210044628	pseudogene	Chr17:19453430-19456954 (-)
DBA/2J	ENSMUSG00185054103	pseudogene	Chr17:21640774-21640931 (-)
FVB/NJ	ENSMUSG00205037212	pseudogene	Chr17:19903940-19904097 (-)
JF1/MsJ	ENSUMUG00000057542	pseudogene	Chr17:21108666-21112139 (-)
LP/J	ENSMUSG00230055157	pseudogene	Chr17:23038285-23038442 (-)
NOD/ShiLtJ	ENSMUSG00190042497	pseudogene	Chr17:19537096-19537253 (-)
NZO/HlLtJ	ENSMUSG00225054837	pseudogene	Chr17:24959902-24960059 (-)
PWK/PhJ	ENSLUMG00010020793	pseudogene	Chr17:19004590-19008061 (-)
SPRET/EiJ	ENSMSPG00010050510	pseudogene	Chr17:20367848-20371287 (-)
WSB/EiJ	ENSIUOG00005041266	pseudogene	Chr17:20280765-20280922 (-)

Homology

• Gene Tree
  Gm50058
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117527 (Evidence)
• NCBI Gene
  115488811

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117527	Ensembl Gene Model | MGI Sequence Detail	3474	C57BL/6J
transcript	ENSMUST00000234771	Ensembl | MGI Sequence Detail	843	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50058:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146680	Chr17:24112581-24112587 (-)	-22 bp