Gm50050 Gene Detail

Summary

• Symbol
  Gm50050
• Name
  predicted gene, 50050

• Feature Type
  lncRNA gene
• IDs
  MGI:6275362
  NCBI Gene: 115488774
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:33078630-33083881 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  345 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275362	lncRNA gene	Chr17:33078630-33097131 (-)
129S1/SvImJ	ENSMUSG00200054276	lncRNA gene	Chr17:28757837-28772107 (-)
A/J	ENSMUSG00195054657	lncRNA gene	Chr17:29696890-29710914 (-)
AKR/J	ENSMUSG00220053564	lncRNA gene	Chr17:28724962-28738984 (-)
BALB/cJ	ENSMUSG00180050094	lncRNA gene	Chr17:29031963-29046236 (-)
C3H/HeJ	ENSMUSG00175053960	lncRNA gene	Chr17:28605978-28619999 (-)
C57BL/6NJ	ENSMUSG00215054414	lncRNA gene	Chr17:28602932-28617209 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051092	lncRNA gene	Chr17:29620280-29637119 (-)
CBA/J	ENSMUSG00210051128	lncRNA gene	Chr17:28432925-28446948 (-)
DBA/2J	ENSMUSG00185054339	lncRNA gene	Chr17:31043893-31058163 (-)
FVB/NJ	ENSMUSG00205053630	lncRNA gene	Chr17:28929486-28943578 (-)
JF1/MsJ	ENSUMUG00000057932	lncRNA gene	Chr17:30341208-30355306 (-)
LP/J	ENSMUSG00230054678	lncRNA gene	Chr17:32156293-32170561 (-)
NOD/ShiLtJ	ENSMUSG00190054278	lncRNA gene	Chr17:28543920-28558008 (-)
NZO/HlLtJ	ENSMUSG00225054929	lncRNA gene	Chr17:34193295-34207575 (-)
PWK/PhJ	ENSLUMG00010053418	lncRNA gene	Chr17:28185659-28200225 (-)
SPRET/EiJ	ENSMSPG00010050353	lncRNA gene	Chr17:29284057-29297803 (-)
WSB/EiJ	ENSIUOG00005051800	lncRNA gene	Chr17:29338431-29352633 (-)

Homology

• Gene Tree
  Gm50050
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000117654 (Evidence)
• NCBI Gene
  115488774

Representative Sequences			Length	Strain/Species
genomic	115488774	NCBI Gene Model | MGI Sequence Detail	5252	C57BL/6J
transcript	XR_003952261	RefSeq | MGI Sequence Detail	893	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;