Gm50045 Pseudogene Detail

Summary

• Symbol
  Gm50045
• Name
  predicted gene, 50045

• Feature Type
  pseudogene
• IDs
  MGI:6275354
  NCBI Gene: 115488794
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:82499397-82500038 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275354	pseudogene	Chr17:82499394-82500152 (-)
129S1/SvImJ	ENSMUSG00200024650	pseudogene	Chr17:77880789-77881430 (-)
A/J	ENSMUSG00195029065	pseudogene	Chr17:79240152-79240793 (-)
AKR/J	ENSMUSG00220013857	pseudogene	Chr17:78173800-78174441 (-)
BALB/cJ	ENSMUSG00180005132	pseudogene	Chr17:78941616-78942257 (-)
C3H/HeJ	ENSMUSG00175015821	pseudogene	Chr17:78192713-78193354 (-)
C57BL/6NJ	ENSMUSG00215015334	pseudogene	Chr17:77936172-77936813 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015595	pseudogene	Chr17:78764467-78765099 (-)
CBA/J	ENSMUSG00210021046	pseudogene	Chr17:78054065-78054706 (-)
DBA/2J	ENSMUSG00185012958	pseudogene	Chr17:80893223-80893864 (-)
DBA/2J	ENSMUSG00185055701	pseudogene	Chr17:20406441-20407079 (-)
FVB/NJ	ENSMUSG00205034367	pseudogene	Chr17:78679703-78680344 (-)
JF1/MsJ	ENSUMUG00000022862	pseudogene	Chr17:80632736-80633372 (-)
LP/J	ENSMUSG00230021861	pseudogene	Chr17:81908900-81909541 (-)
NOD/ShiLtJ	ENSMUSG00190010318	pseudogene	Chr17:77974220-77974861 (-)
NZO/HlLtJ	ENSMUSG00225031399	pseudogene	Chr17:84170518-84171159 (-)
PWK/PhJ	ENSLUMG00010005737	pseudogene	Chr17:77828051-77828691 (-)
SPRET/EiJ	ENSMSPG00010024964	pseudogene	Chr18:34378197-34378864 (-)
SPRET/EiJ	ENSMSPG00010008875	pseudogene	Chr17:78384696-78385329 (-)
WSB/EiJ	ENSIUOG00005010519	pseudogene	Chr17:78881522-78882163 (-)

Homology

• Gene Tree
  Gm50045
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000117507 (Evidence)
• NCBI Gene
  115488794

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117507	Ensembl Gene Model | MGI Sequence Detail	642	C57BL/6J
transcript	ENSMUST00000234943	Ensembl | MGI Sequence Detail	642	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;