Gm50044 Gene Detail

Summary

• Symbol
  Gm50044
• Name
  predicted gene, 50044

• Feature Type
  lncRNA gene
• IDs
  MGI:6275352
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:81678262-81683723 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275352	lncRNA gene	Chr17:81678262-81683723 (+)
129S1/SvImJ	ENSMUSG00200025624	lncRNA gene	Chr17:77060521-77065985 (+)
A/J	ENSMUSG00195028632	lncRNA gene	Chr17:78418826-78424289 (+)
AKR/J	ENSMUSG00220014215	lncRNA gene	Chr17:77352164-77357628 (+)
BALB/cJ	ENSMUSG00180005215	lncRNA gene	Chr17:78119968-78125432 (+)
C3H/HeJ	ENSMUSG00175016553	lncRNA gene	Chr17:77371139-77376593 (+)
C57BL/6NJ	ENSMUSG00215016767	lncRNA gene	Chr17:77106626-77112095 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015497	lncRNA gene	Chr17:77967072-77972478 (+)
CBA/J	ENSMUSG00210021264	lncRNA gene	Chr17:77232542-77237997 (+)
DBA/2J	ENSMUSG00185013097	lncRNA gene	Chr17:80066104-80071558 (+)
FVB/NJ	ENSMUSG00205034840	lncRNA gene	Chr17:77868604-77874072 (+)
JF1/MsJ	ENSUMUG00000023514	lncRNA gene	Chr17:79830854-79836273 (+)
LP/J	ENSMUSG00230021946	lncRNA gene	Chr17:81087304-81092769 (+)
NOD/ShiLtJ	ENSMUSG00190010298	lncRNA gene	Chr17:77152613-77158082 (+)
NZO/HlLtJ	ENSMUSG00225031496	lncRNA gene	Chr17:83348867-83354321 (+)
PWK/PhJ	ENSLUMG00010005793	lncRNA gene	Chr17:77031326-77036750 (+)
SPRET/EiJ	ENSMSPG00010009399	lncRNA gene	Chr17:77540867-77546376 (+)
WSB/EiJ	ENSIUOG00005011017	lncRNA gene	Chr17:78055703-78061163 (+)

Homology

• Gene Tree
  Gm50044
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117413 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117413	Ensembl Gene Model | MGI Sequence Detail	5462	C57BL/6J
transcript	ENSMUST00000234591	Ensembl | MGI Sequence Detail	629	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;