Gm50039 Gene Detail

Summary

• Symbol
  Gm50039
• Name
  predicted gene, 50039

• Feature Type
  lncRNA gene
• IDs
  MGI:6275346
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:88132501-88150828 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  738 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275346	lncRNA gene	Chr17:88132501-88150828 (+)
129S1/SvImJ	ENSMUSG00200023026	lncRNA gene	Chr17:83546723-83560579 (+)
A/J	ENSMUSG00195029796	lncRNA gene	Chr17:84944034-84957987 (+)
AKR/J	ENSMUSG00220016357	lncRNA gene	Chr17:83873738-83887635 (+)
BALB/cJ	ENSMUSG00180028546	lncRNA gene	Chr17:84616125-84630075 (+)
C3H/HeJ	ENSMUSG00175007216	lncRNA gene	Chr17:83881975-83895946 (+)
C57BL/6NJ	ENSMUSG00215021483	lncRNA gene	Chr17:83579898-83593819 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011900	lncRNA gene	Chr17:84414719-84429321 (+)
CBA/J	ENSMUSG00210022422	lncRNA gene	Chr17:83740666-83754559 (+)
DBA/2J	ENSMUSG00185020958	lncRNA gene	Chr17:86539466-86553456 (+)
FVB/NJ	ENSMUSG00205006213	lncRNA gene	Chr17:84359426-84373332 (+)
JF1/MsJ	ENSUMUG00000017111	lncRNA gene	Chr17:86283768-86300164 (+)
LP/J	ENSMUSG00230010678	lncRNA gene	Chr17:87581992-87595962 (+)
NOD/ShiLtJ	ENSMUSG00190009649	lncRNA gene	Chr17:83620782-83634765 (+)
NZO/HlLtJ	ENSMUSG00225031037	lncRNA gene	Chr17:89829360-89843280 (+)
PWK/PhJ	ENSLUMG00010033253	lncRNA gene	Chr17:83505159-83519117 (+)
SPRET/EiJ	ENSMSPG00010021479	lncRNA gene	Chr17:84069340-84083696 (+)
WSB/EiJ	ENSIUOG00005022315	lncRNA gene	Chr17:84553027-84566931 (+)

Homology

• Gene Tree
  Gm50039
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000117466 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117466	Ensembl Gene Model | MGI Sequence Detail	18328	C57BL/6J
transcript	ENSMUST00000234934	Ensembl | MGI Sequence Detail	2598	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50039:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146214	Chr17:88133345-88133353 (+)	848 bp