Gm50036 Pseudogene Detail

Summary

• Symbol
  Gm50036
• Name
  predicted gene, 50036

• Feature Type
  pseudogene
• IDs
  MGI:6275342
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:32797520-32797706 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275342	pseudogene	Chr17:32797520-32797706 (+)
129S1/SvImJ	ENSMUSG00200054314	pseudogene	Chr17:28472495-28472681 (+)
A/J	ENSMUSG00195054637	pseudogene	Chr17:29410792-29410978 (+)
AKR/J	ENSMUSG00220053658	pseudogene	Chr17:28438849-28439035 (+)
BALB/cJ	ENSMUSG00180051591	pseudogene	Chr17:28746617-28746803 (+)
C3H/HeJ	ENSMUSG00175054027	pseudogene	Chr17:28319910-28320096 (+)
C57BL/6NJ	ENSMUSG00215054630	pseudogene	Chr17:28317583-28317769 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050464	pseudogene	Chr17:29319498-29319684 (+)
CBA/J	ENSMUSG00210050887	pseudogene	Chr17:28146838-28147024 (+)
DBA/2J	ENSMUSG00185054416	pseudogene	Chr17:30758541-30758727 (+)
FVB/NJ	ENSMUSG00205053722	pseudogene	Chr17:28643843-28644029 (+)
JF1/MsJ	ENSUMUG00000058082	pseudogene	Chr17:30054158-30054344 (+)
LP/J	ENSMUSG00230054665	pseudogene	Chr17:31870990-31871176 (+)
NOD/ShiLtJ	ENSMUSG00190054196	pseudogene	Chr17:28224112-28224363 (+)
NZO/HlLtJ	ENSMUSG00225054920	pseudogene	Chr17:33907987-33908173 (+)
PWK/PhJ	ENSLUMG00010053402	pseudogene	Chr17:27879438-27879624 (+)
SPRET/EiJ	ENSMSPG00010051051	pseudogene	Chr17:29008690-29008876 (+)
WSB/EiJ	ENSIUOG00005052010	pseudogene	Chr17:29049195-29049381 (+)

Homology

• Gene Tree
  Gm50036
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117366 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117366	Ensembl Gene Model | MGI Sequence Detail	187	C57BL/6J
transcript	ENSMUST00000234662	Ensembl | MGI Sequence Detail	187	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;