Gm50035 Gene Detail

Summary

• Symbol
  Gm50035
• Name
  predicted gene, 50035

• Feature Type
  lncRNA gene
• IDs
  MGI:6275340
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:15334169-15340848 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  303 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275340	lncRNA gene	Chr18:15334169-15340848 (-)
129S1/SvImJ	ENSMUSG00200020021	lncRNA gene	Chr18:12304902-12311577 (-)
A/J	ENSMUSG00195002317	lncRNA gene	Chr18:12468483-12475156 (-)
AKR/J	ENSMUSG00220012013	lncRNA gene	Chr18:12471733-12478408 (-)
BALB/cJ	ENSMUSG00180004074	lncRNA gene	Chr18:12948538-12955224 (-)
C3H/HeJ	ENSMUSG00175004578	lncRNA gene	Chr18:12487638-12494315 (-)
C57BL/6NJ	ENSMUSG00215003635	lncRNA gene	Chr18:12177704-12184383 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014926	lncRNA gene	Chr18:12311895-12318657 (-)
CBA/J	ENSMUSG00210020462	lncRNA gene	Chr18:12496485-12503169 (-)
DBA/2J	ENSMUSG00185008287	lncRNA gene	Chr18:12475381-12482063 (-)
FVB/NJ	ENSMUSG00205017269	lncRNA gene	Chr18:12237992-12244677 (-)
JF1/MsJ	ENSUMUG00000025519	lncRNA gene	Chr18:12586812-12593524 (-)
LP/J	ENSMUSG00230012103	lncRNA gene	Chr18:14531794-14538467 (-)
NOD/ShiLtJ	ENSMUSG00190017232	lncRNA gene	Chr18:12270345-12277025 (-)
NZO/HlLtJ	ENSMUSG00225028004	lncRNA gene	Chr18:14456938-14463620 (-)
PWK/PhJ	ENSLUMG00010015969	lncRNA gene	Chr18:12810103-12816845 (-)
SPRET/EiJ	ENSMSPG00010004876	lncRNA gene	Chr18:12453673-12460381 (-)
WSB/EiJ	ENSIUOG00005019677	lncRNA gene	Chr18:12364078-12370780 (-)

Homology

• Gene Tree
  Gm50035
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117404 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117404	Ensembl Gene Model | MGI Sequence Detail	6680	C57BL/6J
transcript	ENSMUST00000234417	Ensembl | MGI Sequence Detail	1060	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50035:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152523	Chr18:15340847-15340854 (-)	-3 bp