Gm50014 Pseudogene Detail

Summary

• Symbol
  Gm50014
• Name
  predicted gene, 50014

• Feature Type
  pseudogene
• IDs
  MGI:6275305
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:66271960-66272047 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275305	pseudogene	Chr3:66271960-66272047 (+)
129S1/SvImJ	ENSMUSG00200001610	pseudogene	Chr3:63024605-63024692 (+)
A/J	ENSMUSG00195026921	pseudogene	Chr3:63140439-63140526 (+)
AKR/J	ENSMUSG00220025605	pseudogene	Chr3:63174012-63174099 (+)
BALB/cJ	ENSMUSG00180008524	pseudogene	Chr3:63192423-63192510 (+)
C3H/HeJ	ENSMUSG00175003854	pseudogene	Chr3:63042827-63042914 (+)
C57BL/6NJ	ENSMUSG00215007676	pseudogene	Chr3:63486252-63486339 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002550	pseudogene	Chr3:62746269-62746356 (+)
CBA/J	ENSMUSG00210002461	pseudogene	Chr3:63120866-63120953 (+)
DBA/2J	ENSMUSG00185015886	pseudogene	Chr3:63289664-63289751 (+)
FVB/NJ	ENSMUSG00205003876	pseudogene	Chr3:62225581-62225668 (+)
JF1/MsJ	ENSUMUG00000001657	pseudogene	Chr3:62945914-62946001 (+)
LP/J	ENSMUSG00230002574	pseudogene	Chr3:65309126-65309213 (+)
NOD/ShiLtJ	ENSMUSG00190003194	pseudogene	Chr3:63609398-63609485 (+)
NZO/HlLtJ	ENSMUSG00225002566	pseudogene	Chr3:68031658-68031745 (+)
PWK/PhJ	ENSLUMG00010015201	pseudogene	Chr3:62999188-62999275 (+)
SPRET/EiJ	ENSMSPG00010008247	pseudogene	Chr3:63488584-63488671 (+)
WSB/EiJ	ENSIUOG00005016611	pseudogene	Chr3:63553540-63553627 (+)

Homology

• Gene Tree
  Gm50014
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117623 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117623	Ensembl Gene Model | MGI Sequence Detail	88	C57BL/6J
transcript	ENSMUST00000234873	Ensembl | MGI Sequence Detail	88	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;