Gm50011 Gene Detail

Summary

• Symbol
  Gm50011
• Name
  predicted gene, 50011

• Feature Type
  lncRNA gene
• IDs
  MGI:6275299
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:87236401-87252137 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  515 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275299	lncRNA gene	Chr17:87236401-87252137 (+)
129S1/SvImJ	ENSMUSG00200023017	lncRNA gene	Chr17:82643385-82659144 (+)
A/J	ENSMUSG00195030613	lncRNA gene	Chr17:84022044-84038046 (+)
AKR/J	ENSMUSG00220016346	lncRNA gene	Chr17:82974266-82989991 (+)
BALB/cJ	ENSMUSG00180026447	lncRNA gene	Chr17:83694175-83710174 (+)
C3H/HeJ	ENSMUSG00175006888	lncRNA gene	Chr17:82960072-82976069 (+)
C57BL/6NJ	ENSMUSG00215017941	lncRNA gene	Chr17:82680240-82695978 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011874	lncRNA gene	Chr17:83518242-83534207 (+)
CBA/J	ENSMUSG00210022428	lncRNA gene	Chr17:82818792-82834790 (+)
DBA/2J	ENSMUSG00185020926	lncRNA gene	Chr17:85638420-85654152 (+)
FVB/NJ	ENSMUSG00205006338	lncRNA gene	Chr17:83448408-83464337 (+)
JF1/MsJ	ENSUMUG00000015263	lncRNA gene	Chr17:85377038-85392658 (+)
LP/J	ENSMUSG00230010842	lncRNA gene	Chr17:86666559-86682552 (+)
NOD/ShiLtJ	ENSMUSG00190009757	lncRNA gene	Chr17:82718054-82733960 (+)
NZO/HlLtJ	ENSMUSG00225031337	lncRNA gene	Chr17:88929583-88945306 (+)
PWK/PhJ	ENSLUMG00010034131	lncRNA gene	Chr17:82583326-82599327 (+)
SPRET/EiJ	ENSMSPG00010020617	lncRNA gene	Chr17:83171954-83187603 (+)
WSB/EiJ	ENSIUOG00005023527	lncRNA gene	Chr17:83641021-83656930 (+)

Homology

• Gene Tree
  Gm50011
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000117457 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117457	Ensembl Gene Model | MGI Sequence Detail	15737	C57BL/6J
transcript	ENSMUST00000339183	Ensembl | MGI Sequence Detail	672	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;