Gm49997 Pseudogene Detail

Summary

• Symbol
  Gm49997
• Name
  predicted gene, 49997

• Feature Type
  pseudogene
• IDs
  MGI:6275280
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:93475940-93476267 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275280	pseudogene	Chr17:93475940-93476267 (+)
129S1/SvImJ	ENSMUSG00200023251	pseudogene	Chr17:88883961-88884288 (+)
A/J	ENSMUSG00195029142	pseudogene	Chr17:90303628-90303955 (+)
AKR/J	ENSMUSG00220016631	pseudogene	Chr17:89264224-89264551 (+)
BALB/cJ	ENSMUSG00180027133	pseudogene	Chr17:89979046-89979373 (+)
C3H/HeJ	ENSMUSG00175007012	pseudogene	Chr17:89191139-89191466 (+)
C57BL/6NJ	ENSMUSG00215022858	pseudogene	Chr17:88927555-88927882 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011960	pseudogene	Chr17:89792666-89792993 (+)
CBA/J	ENSMUSG00210022414	pseudogene	Chr17:89104794-89105121 (+)
DBA/2J	ENSMUSG00185021432	pseudogene	Chr17:91830757-91831084 (+)
FVB/NJ	ENSMUSG00205006118	pseudogene	Chr17:89679256-89679583 (+)
JF1/MsJ	ENSUMUG00000005609	pseudogene	Chr17:91685728-91686055 (+)
LP/J	ENSMUSG00230010486	pseudogene	Chr17:92873075-92873402 (+)
NOD/ShiLtJ	ENSMUSG00190010149	pseudogene	Chr17:88987953-88988280 (+)
NZO/HlLtJ	ENSMUSG00225029400	pseudogene	Chr17:95164101-95164428 (+)
PWK/PhJ	ENSLUMG00010033569	pseudogene	Chr17:88859995-88860322 (+)
SPRET/EiJ	ENSMSPG00010020449	pseudogene	Chr17:89539623-89539933 (+)
WSB/EiJ	ENSIUOG00005021931	pseudogene	Chr17:89888034-89888361 (+)

Homology

• Gene Tree
  Gm49997
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117591 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117591	Ensembl Gene Model | MGI Sequence Detail	328	C57BL/6J
transcript	ENSMUST00000234088	Ensembl | MGI Sequence Detail	328	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;