Gm49976 Gene Detail

Summary

• Symbol
  Gm49976
• Name
  predicted gene, 49976

• Feature Type
  lncRNA gene
• IDs
  MGI:6275250
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:27049625-27051150 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275250	lncRNA gene	Chr18:27049625-27051150 (-)
129S1/SvImJ	ENSMUSG00200016353	lncRNA gene	Chr18:24055917-24057283 (-)
A/J	ENSMUSG00195002443	lncRNA gene	Chr18:24215493-24216859 (-)
AKR/J	ENSMUSG00220011391	lncRNA gene	Chr18:24215053-24216419 (-)
BALB/cJ	ENSMUSG00180003551	lncRNA gene	Chr18:24655741-24657107 (-)
C3H/HeJ	ENSMUSG00175024517	lncRNA gene	Chr18:24197289-24198655 (-)
C57BL/6NJ	ENSMUSG00215021615	lncRNA gene	Chr18:23907402-23908768 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016485	lncRNA gene	Chr18:23857409-23858776 (-)
CBA/J	ENSMUSG00210016136	lncRNA gene	Chr18:24206186-24207552 (-)
DBA/2J	ENSMUSG00185023252	lncRNA gene	Chr18:24154311-24155677 (-)
FVB/NJ	ENSMUSG00205024434	lncRNA gene	Chr18:23874133-23875499 (-)
JF1/MsJ	ENSUMUG00000028707	lncRNA gene	Chr18:24252734-24254093 (-)
LP/J	ENSMUSG00230006233	lncRNA gene	Chr18:26250065-26251431 (-)
NOD/ShiLtJ	ENSMUSG00190006985	lncRNA gene	Chr18:23966162-23967528 (-)
NZO/HlLtJ	ENSMUSG00225025671	lncRNA gene	Chr18:26209941-26211307 (-)
PWK/PhJ	ENSLUMG00010003792	lncRNA gene	Chr18:24430155-24431510 (-)
SPRET/EiJ	ENSMSPG00010022696	lncRNA gene	Chr18:24354590-24355955 (-)
WSB/EiJ	ENSIUOG00005002851	lncRNA gene	Chr18:23985748-23987114 (-)

Homology

• Gene Tree
  Gm49976
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117456 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117456	Ensembl Gene Model | MGI Sequence Detail	1526	C57BL/6J
transcript	ENSMUST00000234570	Ensembl | MGI Sequence Detail	806	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49976:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152686	Chr18:27051116-27051125 (-)	29 bp