Gm49975 Gene Detail

Summary

• Symbol
  Gm49975
• Name
  predicted gene, 49975

• Feature Type
  lncRNA gene
• IDs
  MGI:6275248
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:47287051-47289257 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275248	lncRNA gene	Chr18:47287051-47289257 (+)
129S1/SvImJ	ENSMUSG00200030347	lncRNA gene	Chr18:44312621-44314620 (+)
A/J	ENSMUSG00195025366	lncRNA gene	Chr18:44491136-44493136 (+)
AKR/J	ENSMUSG00220021620	lncRNA gene	Chr18:44440960-44442959 (+)
BALB/cJ	ENSMUSG00180007838	lncRNA gene	Chr18:44977225-44979195 (+)
C3H/HeJ	ENSMUSG00175011289	lncRNA gene	Chr18:44495154-44497123 (+)
C57BL/6NJ	ENSMUSG00215008537	lncRNA gene	Chr18:44172660-44174657 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014330	lncRNA gene	Chr18:43916803-43918938 (+)
CBA/J	ENSMUSG00210022577	lncRNA gene	Chr18:44546921-44548890 (+)
DBA/2J	ENSMUSG00185028224	lncRNA gene	Chr18:44447125-44449094 (+)
FVB/NJ	ENSMUSG00205015294	lncRNA gene	Chr18:43925014-43927016 (+)
JF1/MsJ	ENSUMUG00000029390	lncRNA gene	Chr18:44470494-44472629 (+)
LP/J	ENSMUSG00230030035	lncRNA gene	Chr18:46524020-46526019 (+)
NOD/ShiLtJ	ENSMUSG00190029077	lncRNA gene	Chr18:44225679-44227678 (+)
NZO/HlLtJ	ENSMUSG00225027897	lncRNA gene	Chr18:46404509-46406493 (+)
PWK/PhJ	ENSLUMG00010022075	lncRNA gene	Chr18:44589785-44591914 (+)
SPRET/EiJ	ENSMSPG00010013617	lncRNA gene	Chr18:44750965-44753236 (+)
WSB/EiJ	ENSIUOG00005009888	lncRNA gene	Chr18:44151634-44153659 (+)

Homology

• Gene Tree
  Gm49975
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm49975
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000117350 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117350	Ensembl Gene Model | MGI Sequence Detail	2207	C57BL/6J
transcript	ENSMUST00000234007	Ensembl | MGI Sequence Detail	1998	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm49975:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150973	Chr18:47288103-47288107 (+)	1,054 bp