Gm49974 Gene Detail

Summary

• Symbol
  Gm49974
• Name
  predicted gene, 49974

• Feature Type
  lncRNA gene
• IDs
  MGI:6275246
  NCBI Gene: 115488916
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:47085630-47092174 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  249 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275246	lncRNA gene	Chr18:47084407-47092174 (-)
129S1/SvImJ	ENSMUSG00200031329	lncRNA gene	Chr18:44103484-44109601 (-)
A/J	ENSMUSG00195025523	lncRNA gene	Chr18:44281991-44288108 (-)
AKR/J	ENSMUSG00220021864	lncRNA gene	Chr18:44231853-44237970 (-)
BALB/cJ	ENSMUSG00180008104	lncRNA gene	Chr18:44775192-44781305 (-)
C3H/HeJ	ENSMUSG00175011245	lncRNA gene	Chr18:44293119-44299231 (-)
C57BL/6NJ	ENSMUSG00215009074	lncRNA gene	Chr18:43970988-43977107 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014143	lncRNA gene	Chr18:43715499-43721640 (-)
CBA/J	ENSMUSG00210022501	lncRNA gene	Chr18:44344899-44351011 (-)
DBA/2J	ENSMUSG00185028616	lncRNA gene	Chr18:44245109-44251221 (-)
FVB/NJ	ENSMUSG00205015975	lncRNA gene	Chr18:43715888-43722005 (-)
JF1/MsJ	ENSUMUG00000029646	lncRNA gene	Chr18:44265527-44271668 (-)
LP/J	ENSMUSG00230029343	lncRNA gene	Chr18:46314917-46321034 (-)
NOD/ShiLtJ	ENSMUSG00190029386	lncRNA gene	Chr18:44016571-44022688 (-)
NZO/HlLtJ	ENSMUSG00225027654	lncRNA gene	Chr18:46195957-46202078 (-)
PWK/PhJ	ENSLUMG00010022140	lncRNA gene	Chr18:44377017-44383162 (-)
SPRET/EiJ	ENSMSPG00010013353	lncRNA gene	Chr18:44546898-44552679 (-)
WSB/EiJ	ENSIUOG00005009760	lncRNA gene	Chr18:43951188-43957298 (-)

Homology

• Gene Tree
  Gm49974
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm49974
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000117588 (Evidence)
• NCBI Gene
  115488916

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117588	Ensembl Gene Model | MGI Sequence Detail	6545	C57BL/6J
transcript	ENSMUST00000323405	Ensembl | MGI Sequence Detail	847	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm49974:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153269	Chr18:47092103-47092112 (-)	66 bp