Gm49970 Gene Detail

Summary

• Symbol
  Gm49970
• Name
  predicted gene, 49970

• Feature Type
  lncRNA gene
• IDs
  MGI:6275239
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:12995486-12998343 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275239	lncRNA gene	Chr18:12995486-12998343 (+)
129S1/SvImJ	ENSMUSG00200026120	lncRNA gene	Chr18:9927498-9930362 (+)
A/J	ENSMUSG00195002370	lncRNA gene	Chr18:10124558-10127415 (+)
AKR/J	ENSMUSG00220012068	lncRNA gene	Chr18:10119037-10121894 (+)
BALB/cJ	ENSMUSG00180004191	lncRNA gene	Chr18:10573609-10576466 (+)
C3H/HeJ	ENSMUSG00175004529	lncRNA gene	Chr18:10112902-10115759 (+)
C57BL/6NJ	ENSMUSG00215025908	lncRNA gene	Chr18:9835012-9837869 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017661	lncRNA gene	Chr18:9903038-9905912 (+)
CBA/J	ENSMUSG00210020652	lncRNA gene	Chr18:10121718-10124575 (+)
DBA/2J	ENSMUSG00185008370	lncRNA gene	Chr18:10129997-10132853 (+)
FVB/NJ	ENSMUSG00205037518	lncRNA gene	Chr18:9894264-9897121 (+)
JF1/MsJ	ENSUMUG00000025089	lncRNA gene	Chr18:10167209-10170075 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010351	lncRNA gene	Chr18:9894431-9897288 (+)
NZO/HlLtJ	ENSMUSG00225028132	lncRNA gene	Chr18:12111793-12114649 (+)
PWK/PhJ	ENSLUMG00010015875	lncRNA gene	Chr18:10377326-10380194 (+)
SPRET/EiJ	ENSMSPG00010012036	lncRNA gene	Chr18:10049379-10052264 (+)
WSB/EiJ	ENSIUOG00005028044	lncRNA gene	Chr18:10013153-10016010 (+)

Homology

• Gene Tree
  Gm49970
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117494 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117494	Ensembl Gene Model | MGI Sequence Detail	2858	C57BL/6J
transcript	ENSMUST00000234213	Ensembl | MGI Sequence Detail	2858	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm49970:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150117	Chr18:12995195-12995213 (+)	-282 bp