Gm49965 Gene Detail

Summary

• Symbol
  Gm49965
• Name
  predicted gene, 49965

• Feature Type
  lncRNA gene
• IDs
  MGI:6270691
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:43999609-44146606 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1587 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270691	lncRNA gene	Chr14:43999609-44146606 (+)
129S1/SvImJ	ENSMUSG00200017430	lncRNA gene	Chr14:33041515-33182015 (-)
A/J	ENSMUSG00195031416	lncRNA gene	Chr14:9760-156759 (+)
AKR/J	ENSMUSG00220030241	lncRNA gene	Chr14:41766101-41913088 (+)
BALB/cJ	ENSMUSG00180047390	lncRNA gene	Chr14:32931160-33048902 (+)
C3H/HeJ	ENSMUSG00175032045	lncRNA gene	Chr14:34719666-34860142 (-)
C57BL/6NJ	ENSMUSG00215039179	lncRNA gene	Chr14:33398393-33477421 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210046151	lncRNA gene	Chr14:33767229-33886181 (+)
DBA/2J	ENSMUSG00185015626	lncRNA gene	Chr14:38188322-38301375 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000033746	lncRNA gene	Chr14:46190496-46287790 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010003376	lncRNA gene	Chr14:35600896-35703771 (-)
WSB/EiJ	ENSIUOG00005041980	lncRNA gene	Chr14:33125089-33224191 (+)

Homology

• Gene Tree
  Gm49965
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45

• Ensembl
  ENSMUSG00000115272 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115272	Ensembl Gene Model | MGI Sequence Detail	146998	C57BL/6J
transcript	ENSMUST00000355095	Ensembl | MGI Sequence Detail	1754	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49965:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125195	Chr14:44094959-44094966 (+)	95,354 bp