Gm49959 Gene Detail

Summary

• Symbol
  Gm49959
• Name
  predicted gene, 49959

• Feature Type
  lncRNA gene
• IDs
  MGI:6270682
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:13003442-13010549 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270682	lncRNA gene	Chr17:13003442-13010549 (-)
129S1/SvImJ	ENSMUSG00200034979	lncRNA gene	Chr17:9229172-9235946 (-)
A/J	ENSMUSG00195023770	lncRNA gene	Chr17:9428484-9435262 (-)
AKR/J	ENSMUSG00220027488	lncRNA gene	Chr17:9494635-9501411 (-)
BALB/cJ	ENSMUSG00180028293	lncRNA gene	Chr17:9077693-9084469 (-)
C3H/HeJ	ENSMUSG00175035353	lncRNA gene	Chr17:9223682-9230460 (-)
C57BL/6NJ	ENSMUSG00215029513	lncRNA gene	Chr17:9273106-9279884 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022793	lncRNA gene	Chr17:9473125-9479963 (-)
CBA/J	ENSMUSG00210041548	lncRNA gene	Chr17:8886954-8893730 (-)
DBA/2J	ENSMUSG00185023822	lncRNA gene	Chr17:9978038-9984814 (-)
FVB/NJ	ENSMUSG00205009868	lncRNA gene	Chr17:9312141-9318918 (-)
JF1/MsJ	ENSUMUG00000038901	lncRNA gene	Chr17:9582287-9589073 (-)
LP/J	ENSMUSG00230027530	lncRNA gene	Chr17:11412825-11419601 (-)
NOD/ShiLtJ	ENSMUSG00190036864	lncRNA gene	Chr17:9417523-9424315 (-)
NZO/HlLtJ	ENSMUSG00225049102	lncRNA gene	Chr17:13331713-13338489 (-)
PWK/PhJ	ENSLUMG00010019416	lncRNA gene	Chr17:9404118-9410886 (-)
SPRET/EiJ	ENSMSPG00010038397	lncRNA gene	Chr17:4195010-4201824 (+)
WSB/EiJ	ENSIUOG00005014360	lncRNA gene	Chr17:9310279-9317056 (-)

Homology

• Gene Tree
  Gm49959
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm49959
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117030 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117030	Ensembl Gene Model | MGI Sequence Detail	7108	C57BL/6J
transcript	ENSMUST00000232857	Ensembl | MGI Sequence Detail	473	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:279720 Andergassen D, et al., The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes. PLoS Genet. 2019 Jul;15(7):e1008268