Gm49958 Gene Detail

Summary

• Symbol
  Gm49958
• Name
  predicted gene, 49958

• Feature Type
  lncRNA gene
• IDs
  MGI:6270680
  NCBI Gene: 118568315
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:13014633-13019682 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270680	lncRNA gene	Chr17:13012812-13020721 (-)
129S1/SvImJ	ENSMUSG00200034984	lncRNA gene	Chr17:9240030-9245084 (-)
A/J	ENSMUSG00195023773	lncRNA gene	Chr17:9439345-9444399 (-)
AKR/J	ENSMUSG00220027508	lncRNA gene	Chr17:9505494-9510550 (-)
BALB/cJ	ENSMUSG00180028316	lncRNA gene	Chr17:9088552-9093608 (-)
C3H/HeJ	ENSMUSG00175035372	lncRNA gene	Chr17:9234538-9239593 (-)
C57BL/6NJ	ENSMUSG00215029556	lncRNA gene	Chr17:9283970-9289021 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022800	lncRNA gene	Chr17:9484059-9489137 (-)
CBA/J	ENSMUSG00210041568	lncRNA gene	Chr17:8897808-8902861 (-)
DBA/2J	ENSMUSG00185023831	lncRNA gene	Chr17:9988897-9993951 (-)
FVB/NJ	ENSMUSG00205009875	lncRNA gene	Chr17:9323005-9328054 (-)
JF1/MsJ	ENSUMUG00000038937	lncRNA gene	Chr17:9593147-9598209 (-)
LP/J	ENSMUSG00230027458	lncRNA gene	Chr17:11423684-11428734 (-)
NOD/ShiLtJ	ENSMUSG00190036906	lncRNA gene	Chr17:9428391-9434429 (-)
NZO/HlLtJ	ENSMUSG00225049044	lncRNA gene	Chr17:13342572-13347622 (-)
PWK/PhJ	ENSLUMG00010019419	lncRNA gene	Chr17:9414960-9420065 (-)
SPRET/EiJ	ENSMSPG00010038416	lncRNA gene	Chr17:4185863-4190891 (+)
WSB/EiJ	ENSIUOG00005014377	lncRNA gene	Chr17:9321141-9326192 (-)

Homology

• Gene Tree
  Gm49958
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm49958
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117061 (Evidence)
• NCBI Gene
  118568315

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117061	Ensembl Gene Model | MGI Sequence Detail	5050	C57BL/6J
transcript	ENSMUST00000233721	Ensembl | MGI Sequence Detail	353	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:279720 Andergassen D, et al., The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes. PLoS Genet. 2019 Jul;15(7):e1008268