Gm49957 Gene Detail

Summary

• Symbol
  Gm49957
• Name
  predicted gene, 49957

• Feature Type
  lncRNA gene
• IDs
  MGI:6270678
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19338692-19427890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  233 from dbSNP Build 142
• Strain Annotations
  40

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270678	lncRNA gene	Chr12:19338692-19427890 (+)
129S1/SvImJ	ENSMUSG00200024368	lncRNA gene	Chr12:15316406-15323030 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175006113	lncRNA gene	Chr12:15005118-15013919 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006534	lncRNA gene	Chr12:15619200-15619205 (-)
CBA/J	ENSMUSG00210008493	lncRNA gene	Chr12:15629692-15630106 (-)
DBA/2J	ENSMUSG00185004046	lncRNA gene	Chr12:16835643-16844097 (-)
DBA/2J	ENSMUSG00185004612	lncRNA gene	Chr12:19233557-19242437 (-)
DBA/2J	ENSMUSG00185004559	lncRNA gene	Chr12:17361086-17375510 (-)
DBA/2J	ENSMUSG00185004532	lncRNA gene	Chr12:16190211-16196523 (-)
FVB/NJ	ENSMUSG00205001728	lncRNA gene	Chr12:16041244-16041658 (-)
JF1/MsJ	ENSUMUG00000012278	lncRNA gene	Chr12:16819851-16826253 (-)
JF1/MsJ	ENSUMUG00000008481	lncRNA gene	Chr12:21046160-21054568 (-)
JF1/MsJ	ENSUMUG00000009770	lncRNA gene	Chr12:16243359-16251810 (+)
JF1/MsJ	ENSUMUG00000012188	lncRNA gene	Chr12:15677665-15686553 (+)
JF1/MsJ	ENSUMUG00000008906	lncRNA gene	Chr12:23477180-23486388 (-)
JF1/MsJ	ENSUMUG00000012244	lncRNA gene	Chr12:16443753-16448839 (+)
JF1/MsJ	ENSUMUG00000012699	lncRNA gene	Chr12:19578105-19587073 (-)
JF1/MsJ	ENSUMUG00000012316	lncRNA gene	Chr12:17025174-17033790 (+)
JF1/MsJ	ENSUMUG00000008655	lncRNA gene	Chr12:22115771-22130191 (-)
LP/J	ENSMUSG00230007635	lncRNA gene	Chr12:22342731-22351184 (+)
LP/J	ENSMUSG00230023275	lncRNA gene	Chr12:17378002-17502793 (+)
LP/J	ENSMUSG00230023282	lncRNA gene	Chr12:17584099-17592987 (+)
LP/J	ENSMUSG00230008270	lncRNA gene	Chr12:21113992-21122606 (-)
LP/J	ENSMUSG00230008308	lncRNA gene	Chr12:21975289-21983743 (-)
LP/J	ENSMUSG00230023327	lncRNA gene	Chr12:18225176-18231491 (+)
LP/J	ENSMUSG00230008525	lncRNA gene	Chr12:26200233-26209112 (-)
LP/J	ENSMUSG00230008346	lncRNA gene	Chr12:22982493-22996916 (+)
LP/J	ENSMUSG00230008391	lncRNA gene	Chr12:24327801-24342221 (-)
LP/J	ENSMUSG00230008367	lncRNA gene	Chr12:23599407-23613833 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225035748	lncRNA gene	Chr12:24932882-24947305 (+)
NZO/HlLtJ	ENSMUSG00225035779	lncRNA gene	Chr12:25549787-25564213 (+)
NZO/HlLtJ	ENSMUSG00225035895	lncRNA gene	Chr12:28383330-28392209 (-)
NZO/HlLtJ	ENSMUSG00225035007	lncRNA gene	Chr12:26081052-26089504 (+)
NZO/HlLtJ	ENSMUSG00225035640	lncRNA gene	Chr12:23316555-23325169 (-)
NZO/HlLtJ	ENSMUSG00225030424	lncRNA gene	Chr12:19688681-19697570 (+)
NZO/HlLtJ	ENSMUSG00225030421	lncRNA gene	Chr12:19482561-19607390 (+)
NZO/HlLtJ	ENSMUSG00225035798	lncRNA gene	Chr12:26134711-26149135 (-)
NZO/HlLtJ	ENSMUSG00225035811	lncRNA gene	Chr12:26510882-26525300 (-)
NZO/HlLtJ	ENSMUSG00225035721	lncRNA gene	Chr12:24177808-24186262 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001810	lncRNA gene	Chr12:15956965-15963441 (+)

Homology

• Gene Tree
  Gm49957
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47

• Ensembl
  ENSMUSG00000073184 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073184	Ensembl Gene Model | MGI Sequence Detail	89199	C57BL/6J
transcript	ENSMUST00000280715	Ensembl | MGI Sequence Detail	1514	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;