Gm49939 Pseudogene Detail

Summary

• Symbol
  Gm49939
• Name
  predicted gene, 49939

• Feature Type
  pseudogene
• IDs
  MGI:6270653
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:67085876-67086128 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270653	pseudogene	Chr17:67085876-67086128 (+)
129S1/SvImJ	ENSMUSG00200039445	pseudogene	Chr17:62426355-62426607 (+)
A/J	ENSMUSG00195019803	pseudogene	Chr17:63768664-63768916 (+)
AKR/J	ENSMUSG00220018855	pseudogene	Chr17:62849530-62849782 (+)
BALB/cJ	ENSMUSG00180021459	pseudogene	Chr17:63505982-63506234 (+)
C3H/HeJ	ENSMUSG00175032545	pseudogene	Chr17:62813495-62813747 (+)
C57BL/6NJ	ENSMUSG00215034920	pseudogene	Chr17:62474437-62474689 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027386	pseudogene	Chr17:63418382-63418634 (+)
CBA/J	ENSMUSG00210031304	pseudogene	Chr17:62613407-62613659 (+)
DBA/2J	ENSMUSG00185023452	pseudogene	Chr17:65457854-65458106 (+)
FVB/NJ	ENSMUSG00205018808	pseudogene	Chr17:63232479-63232731 (+)
JF1/MsJ	ENSUMUG00000042888	pseudogene	Chr17:65122618-65122874 (+)
LP/J	ENSMUSG00230016653	pseudogene	Chr17:66444585-66444837 (+)
NOD/ShiLtJ	ENSMUSG00190042259	pseudogene	Chr17:62592328-62592580 (+)
NZO/HlLtJ	ENSMUSG00225026024	pseudogene	Chr17:68720180-68720432 (+)
PWK/PhJ	ENSLUMG00010030463	pseudogene	Chr17:62408213-62408469 (+)
SPRET/EiJ	ENSMSPG00010018153	pseudogene	Chr17:62765395-62765634 (+)
WSB/EiJ	ENSIUOG00005034185	pseudogene	Chr17:63464705-63464957 (+)

Homology

• Gene Tree
  Gm49939
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117174 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117174	Ensembl Gene Model | MGI Sequence Detail	253	C57BL/6J
transcript	ENSMUST00000233342	Ensembl | MGI Sequence Detail	253	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;