Gm49920 Pseudogene Detail

Summary

• Symbol
  Gm49920
• Name
  predicted gene, 49920

• Feature Type
  pseudogene
• IDs
  MGI:6270624
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:55370413-55371000 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270624	pseudogene	Chr17:55370413-55371000 (+)
129S1/SvImJ	ENSMUSG00200028630	pseudogene	Chr17:50632898-50633485 (+)
A/J	ENSMUSG00195007199	pseudogene	Chr17:52040277-52040864 (+)
AKR/J	ENSMUSG00220038981	pseudogene	Chr17:51085879-51086466 (+)
BALB/cJ	ENSMUSG00180006575	pseudogene	Chr17:51796357-51796944 (+)
C3H/HeJ	ENSMUSG00175007847	pseudogene	Chr17:51103427-51104014 (+)
C57BL/6NJ	ENSMUSG00215037018	pseudogene	Chr17:50720499-50721086 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019452	pseudogene	Chr17:51876194-51876274 (+)
CBA/J	ENSMUSG00210040347	pseudogene	Chr17:50883706-50884293 (+)
DBA/2J	ENSMUSG00185009634	pseudogene	Chr17:53753550-53754137 (+)
FVB/NJ	ENSMUSG00205007587	pseudogene	Chr17:51426294-51426881 (+)
JF1/MsJ	ENSUMUG00000036065	pseudogene	Chr17:53452389-53452469 (+)
LP/J	ENSMUSG00230028868	pseudogene	Chr17:54721145-54721732 (+)
NOD/ShiLtJ	ENSMUSG00190018240	pseudogene	Chr17:50883335-50883922 (+)
NZO/HlLtJ	ENSMUSG00225043256	pseudogene	Chr17:57006555-57007142 (+)
PWK/PhJ	ENSLUMG00010036653	pseudogene	Chr17:50666278-50666358 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005024710	pseudogene	Chr17:51793779-51794366 (+)

Homology

• Gene Tree
  Gm49920
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117340 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117340	Ensembl Gene Model | MGI Sequence Detail	588	C57BL/6J
transcript	ENSMUST00000229170	Ensembl | MGI Sequence Detail	588	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;