Gm49912 Gene Detail

Summary

• Symbol
  Gm49912
• Name
  predicted gene, 49912

• Feature Type
  lncRNA gene
• IDs
  MGI:6270613
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr17:52611078-52661813 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1051 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270613	lncRNA gene	Chr17:52611078-52661813 (-)
129S1/SvImJ	ENSMUSG00200028918	lncRNA gene	Chr17:47848807-47886652 (-)
A/J	ENSMUSG00195022474	lncRNA gene	Chr17:49310040-49347909 (-)
AKR/J	ENSMUSG00220038574	lncRNA gene	Chr17:48310031-48347893 (-)
BALB/cJ	ENSMUSG00180026093	lncRNA gene	Chr17:49066251-49104119 (-)
C3H/HeJ	ENSMUSG00175016903	lncRNA gene	Chr17:48373531-48411399 (-)
C57BL/6NJ	ENSMUSG00215034104	lncRNA gene	Chr17:47950440-47988292 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026061	lncRNA gene	Chr17:49164339-49199872 (-)
CBA/J	ENSMUSG00210040655	lncRNA gene	Chr17:48123073-48160936 (-)
DBA/2J	ENSMUSG00185009259	lncRNA gene	Chr17:51022213-51060077 (-)
FVB/NJ	ENSMUSG00205053418	lncRNA gene	Chr17:48604309-48642173 (-)
JF1/MsJ	ENSUMUG00000036996	lncRNA gene	Chr17:50778859-50821032 (-)
LP/J	ENSMUSG00230029109	lncRNA gene	Chr17:51960201-51998047 (-)
NOD/ShiLtJ	ENSMUSG00190018218	lncRNA gene	Chr17:48098978-48136844 (-)
NZO/HlLtJ	ENSMUSG00225043963	lncRNA gene	Chr17:54189001-54226853 (-)
PWK/PhJ	ENSLUMG00010036711	lncRNA gene	Chr17:47965419-48007658 (-)
SPRET/EiJ	ENSMSPG00010040017	lncRNA gene	Chr17:48199205-48245762 (-)
WSB/EiJ	ENSIUOG00005028130	lncRNA gene	Chr17:49026099-49063943 (-)

Homology

• Gene Tree
  Gm49912
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000117033 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117033	Ensembl Gene Model | MGI Sequence Detail	50736	C57BL/6J
transcript	ENSMUST00000308732	Ensembl | MGI Sequence Detail	1027	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49912:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr148703	Chr17:52657078-52657089 (-)	4,729 bp
Tssr5164	Chr17:52657070-52657075 (-)	4,740 bp
Tssr148702	Chr17:52657041-52657050 (-)	4,767 bp
Tssr148701	Chr17:52655670-52655686 (-)	6,135 bp
Tssr148700	Chr17:52619232-52619248 (-)	42,573 bp
Tssr148699	Chr17:52619193-52619209 (-)	42,612 bp
Tssr148698	Chr17:52613649-52613651 (-)	48,163 bp