Gm49896 Gene Detail

Summary

• Symbol
  Gm49896
• Name
  predicted gene, 49896

• Feature Type
  lncRNA gene
• IDs
  MGI:6270589
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:48863761-48879215 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  658 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270589	lncRNA gene	Chr17:48863761-48879215 (+)
129S1/SvImJ	ENSMUSG00200028668	lncRNA gene	Chr17:44064239-44079720 (+)
A/J	ENSMUSG00195022654	lncRNA gene	Chr17:45562964-45578433 (+)
AKR/J	ENSMUSG00220037592	lncRNA gene	Chr17:44562974-44578441 (+)
BALB/cJ	ENSMUSG00180027424	lncRNA gene	Chr17:45319304-45334777 (+)
C3H/HeJ	ENSMUSG00175017166	lncRNA gene	Chr17:44626833-44642300 (+)
C57BL/6NJ	ENSMUSG00215036932	lncRNA gene	Chr17:44188432-44203887 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026107	lncRNA gene	Chr17:45361182-45361521 (+)
CBA/J	ENSMUSG00210038692	lncRNA gene	Chr17:44376409-44391878 (+)
DBA/2J	ENSMUSG00185030545	lncRNA gene	Chr17:47275427-47290894 (+)
FVB/NJ	ENSMUSG00205053328	lncRNA gene	Chr17:44832352-44847861 (+)
JF1/MsJ	ENSUMUG00000039872	lncRNA gene	Chr17:46960179-46975679 (+)
LP/J	ENSMUSG00230042002	lncRNA gene	Chr17:48175749-48191234 (+)
NOD/ShiLtJ	ENSMUSG00190018853	lncRNA gene	Chr17:44336560-44352063 (+)
NZO/HlLtJ	ENSMUSG00225044373	lncRNA gene	Chr17:50426790-50442247 (+)
PWK/PhJ	ENSLUMG00010037710	lncRNA gene	Chr17:44194477-44209935 (+)
SPRET/EiJ	ENSMSPG00010038867	lncRNA gene	Chr17:44381630-44397113 (+)
WSB/EiJ	ENSIUOG00005027699	lncRNA gene	Chr17:45230584-45246046 (+)

Homology

• Gene Tree
  Gm49896
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117019 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117019	Ensembl Gene Model | MGI Sequence Detail	15455	C57BL/6J
transcript	ENSMUST00000233471	Ensembl | MGI Sequence Detail	635	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;