Gm49866 Pseudogene Detail

Summary

• Symbol
  Gm49866
• Name
  predicted gene, 49866

• Feature Type
  pseudogene
• IDs
  MGI:6270541
  NCBI Gene: 112841588
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:65867380-65867771 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270541	pseudogene	Chr17:65867360-65867804 (-)
129S1/SvImJ	ENSMUSG00200039153	pseudogene	Chr17:61216601-61216992 (-)
A/J	ENSMUSG00195018777	pseudogene	Chr17:62545654-62546045 (-)
AKR/J	ENSMUSG00220019127	pseudogene	Chr17:61630583-61630974 (-)
BALB/cJ	ENSMUSG00180022424	pseudogene	Chr17:62282924-62283315 (-)
C3H/HeJ	ENSMUSG00175032701	pseudogene	Chr17:61603777-61604168 (-)
C57BL/6NJ	ENSMUSG00215031016	pseudogene	Chr17:61255477-61255868 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027987	pseudogene	Chr17:62207576-62207963 (-)
CBA/J	ENSMUSG00210031469	pseudogene	Chr17:61403679-61404070 (-)
DBA/2J	ENSMUSG00185023508	pseudogene	Chr17:64234873-64235264 (-)
FVB/NJ	ENSMUSG00205020335	pseudogene	Chr17:62009374-62009765 (-)
JF1/MsJ	ENSUMUG00000042741	pseudogene	Chr17:63893976-63894363 (-)
LP/J	ENSMUSG00230017627	pseudogene	Chr17:65234871-65235262 (-)
NOD/ShiLtJ	ENSMUSG00190041590	pseudogene	Chr17:61369389-61369780 (-)
NZO/HlLtJ	ENSMUSG00225026412	pseudogene	Chr17:67509921-67510312 (-)
PWK/PhJ	ENSLUMG00010030916	pseudogene	Chr17:61173974-61174361 (-)
SPRET/EiJ	ENSMSPG00010018823	pseudogene	Chr17:61557529-61557915 (-)
WSB/EiJ	ENSIUOG00005034373	pseudogene	Chr17:62235673-62236064 (-)

Homology

• Gene Tree
  Gm49866
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117158 (Evidence)
• NCBI Gene
  112841588

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117158	Ensembl Gene Model | MGI Sequence Detail	392	C57BL/6J
transcript	ENSMUST00000233030	Ensembl | MGI Sequence Detail	392	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;