Gm49830 Pseudogene Detail

Summary

• Symbol
  Gm49830
• Name
  predicted gene, 49830

• Feature Type
  pseudogene
• IDs
  MGI:6270497
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:39688102-39688299 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270497	pseudogene	Chr17:39688102-39688299 (-)
129S1/SvImJ	ENSMUSG00200051691	pseudogene	Chr17:35133088-35133285 (-)
A/J	ENSMUSG00195047774	pseudogene	Chr17:36352934-36353131 (-)
A/J	ENSMUSG00195049480	pseudogene	Chr17:37040905-37041102 (-)
AKR/J	ENSMUSG00220052461	pseudogene	Chr17:35385439-35385636 (-)
AKR/J	ENSMUSG00220053044	pseudogene	Chr17:35980280-35980477 (-)
BALB/cJ	ENSMUSG00180045572	pseudogene	Chr17:36160426-36160623 (-)
BALB/cJ	ENSMUSG00180047165	pseudogene	Chr17:36839061-36839258 (-)
C3H/HeJ	ENSMUSG00175045502	pseudogene	Chr17:35356383-35356580 (-)
C3H/HeJ	ENSMUSG00175047134	pseudogene	Chr17:36059380-36059577 (-)
C57BL/6NJ	ENSMUSG00215054145	pseudogene	Chr17:35660891-35661088 (-)
C57BL/6NJ	ENSMUSG00215053665	pseudogene	Chr17:34973024-34973221 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210052160	pseudogene	Chr17:35094342-35094539 (-)
CBA/J	ENSMUSG00210052795	pseudogene	Chr17:35797307-35797504 (-)
DBA/2J	ENSMUSG00185055357	pseudogene	Chr17:38141296-38141493 (-)
DBA/2J	ENSMUSG00185055953	pseudogene	Chr17:38819912-38820109 (-)
FVB/NJ	ENSMUSG00205053567	pseudogene	Chr17:35613360-35613557 (-)
JF1/MsJ	ENSUMUG00000057264	pseudogene	Chr17:37226280-37226477 (-)
JF1/MsJ	ENSUMUG00000058040	pseudogene	Chr17:38466652-38466849 (-)
JF1/MsJ	ENSUMUG00000058038	pseudogene	Chr17:38194022-38194219 (-)
JF1/MsJ	ENSUMUG00000058036	pseudogene	Chr17:37925953-37926150 (-)
LP/J	ENSMUSG00230054889	pseudogene	Chr17:39245703-39245900 (-)
NOD/ShiLtJ	ENSMUSG00190053974	pseudogene	Chr17:35020870-35021067 (-)
NOD/ShiLtJ	ENSMUSG00190054012	pseudogene	Chr17:35708726-35708923 (-)
NZO/HlLtJ	ENSMUSG00225044167	pseudogene	Chr17:41229688-41229885 (-)
NZO/HlLtJ	ENSMUSG00225044465	pseudogene	Chr17:41908220-41908417 (-)
PWK/PhJ	ENSLUMG00010047654	pseudogene	Chr17:35684941-35685138 (-)
PWK/PhJ	ENSLUMG00010045737	pseudogene	Chr17:34930933-34931130 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051597	pseudogene	Chr17:36196448-36196645 (-)

Homology

• Gene Tree
  Gm49830
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31

• Ensembl
  ENSMUSG00000117267 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117267	Ensembl Gene Model | MGI Sequence Detail	198	C57BL/6J
transcript	ENSMUST00000232809	Ensembl | MGI Sequence Detail	198	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;