Gm49820 Pseudogene Detail

Summary

• Symbol
  Gm49820
• Name
  predicted gene, 49820

• Feature Type
  pseudogene
• IDs
  MGI:6270487
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:39141733-39143219 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270487	pseudogene	Chr17:39141733-39143219 (+)
129S1/SvImJ	ENSMUSG00200051480	pseudogene	Chr17:34597809-34599291 (+)
A/J	ENSMUSG00195048583	pseudogene	Chr17:35806523-35808009 (+)
AKR/J	ENSMUSG00220052394	pseudogene	Chr17:34828692-34830175 (+)
BALB/cJ	ENSMUSG00180044090	pseudogene	Chr17:35613859-35615341 (+)
C3H/HeJ	ENSMUSG00175046694	pseudogene	Chr17:34815952-34817435 (+)
C57BL/6NJ	ENSMUSG00215053559	pseudogene	Chr17:34418855-34420341 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051550	pseudogene	Chr17:35937239-35938722 (+)
CBA/J	ENSMUSG00210052452	pseudogene	Chr17:34553897-34555380 (+)
DBA/2J	ENSMUSG00185055005	pseudogene	Chr17:37594754-37596236 (+)
FVB/NJ	ENSMUSG00205053595	pseudogene	Chr17:35062017-35063502 (+)
JF1/MsJ	ENSUMUG00000057430	pseudogene	Chr17:36692670-36694152 (+)
LP/J	ENSMUSG00230054752	pseudogene	Chr17:38709252-38710734 (+)
NOD/ShiLtJ	ENSMUSG00190053510	pseudogene	Chr17:34480990-34482476 (+)
NZO/HlLtJ	ENSMUSG00225043714	pseudogene	Chr17:40683124-40684606 (+)
PWK/PhJ	ENSLUMG00010044480	pseudogene	Chr17:34384550-34386032 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005052040	pseudogene	Chr17:35634830-35636315 (+)

Homology

• Gene Tree
  Gm49820
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117151 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117151	Ensembl Gene Model | MGI Sequence Detail	1487	C57BL/6J
transcript	ENSMUST00000232961	Ensembl | MGI Sequence Detail	240	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;