Gm49812 Pseudogene Detail

Summary

• Symbol
  Gm49812
• Name
  predicted gene, 49812

• Feature Type
  pseudogene
• IDs
  MGI:6270479
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:38835347-38835646 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270479	pseudogene	Chr17:38835347-38835646 (-)
129S1/SvImJ	ENSMUSG00200052524	pseudogene	Chr17:34310701-34311000 (-)
A/J	ENSMUSG00195048437	pseudogene	Chr17:35500055-35500354 (-)
AKR/J	ENSMUSG00220052923	pseudogene	Chr17:34252486-34252785 (-)
BALB/cJ	ENSMUSG00180044506	pseudogene	Chr17:35004815-35005114 (-)
C3H/HeJ	ENSMUSG00175046960	pseudogene	Chr17:34192887-34193186 (-)
C57BL/6NJ	ENSMUSG00215053766	pseudogene	Chr17:34133848-34134147 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051852	pseudogene	Chr17:35343431-35343730 (-)
CAST/EiJ	ENSTCUG00005051881	pseudogene	Chr17:35635485-35635785 (-)
CBA/J	ENSMUSG00210052771	pseudogene	Chr17:33929102-33929401 (-)
DBA/2J	ENSMUSG00185055461	pseudogene	Chr17:36985639-36985938 (-)
FVB/NJ	ENSMUSG00205053862	pseudogene	Chr17:34434565-34434864 (-)
JF1/MsJ	ENSUMUG00000057483	pseudogene	Chr17:36077094-36077393 (-)
LP/J	ENSMUSG00230054729	pseudogene	Chr17:38105888-38106187 (-)
NOD/ShiLtJ	ENSMUSG00190053609	pseudogene	Chr17:34175117-34175416 (-)
NZO/HlLtJ	ENSMUSG00225054938	pseudogene	Chr17:40074039-40074338 (-)
PWK/PhJ	ENSLUMG00010047036	pseudogene	Chr17:33780736-33781035 (-)
SPRET/EiJ	ENSMSPG00010050942	pseudogene	Chr17:35164398-35164695 (-)
WSB/EiJ	ENSIUOG00005052474	pseudogene	Chr17:35265542-35265841 (+)
WSB/EiJ	ENSIUOG00005051930	pseudogene	Chr17:35041391-35041690 (-)
WSB/EiJ	ENSIUOG00005051944	pseudogene	Chr17:35324634-35324934 (-)

Homology

• Gene Tree
  Gm49812
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000117127 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117127	Ensembl Gene Model | MGI Sequence Detail	300	C57BL/6J
transcript	ENSMUST00000233918	Ensembl | MGI Sequence Detail	300	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;