Gm49808 Gene Detail

Summary

• Symbol
  Gm49808
• Name
  predicted gene, 49808

• Feature Type
  lncRNA gene
• IDs
  MGI:6270474
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:10083348-10101843 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  589 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270474	lncRNA gene	Chr17:10083348-10101843 (+)
129S1/SvImJ	ENSMUSG00200035200	lncRNA gene	Chr17:6319484-6337224 (+)
A/J	ENSMUSG00195023850	lncRNA gene	Chr17:6516411-6534121 (+)
AKR/J	ENSMUSG00220027656	lncRNA gene	Chr17:6576934-6594668 (+)
BALB/cJ	ENSMUSG00180026745	lncRNA gene	Chr17:6159965-6177706 (+)
C3H/HeJ	ENSMUSG00175034660	lncRNA gene	Chr17:6306751-6324459 (+)
C57BL/6NJ	ENSMUSG00215027065	lncRNA gene	Chr17:6350364-6368092 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022570	lncRNA gene	Chr17:6537658-6555411 (+)
CBA/J	ENSMUSG00210038362	lncRNA gene	Chr17:5973474-5991184 (+)
DBA/2J	ENSMUSG00185023640	lncRNA gene	Chr17:7066257-7083966 (+)
FVB/NJ	ENSMUSG00205009483	lncRNA gene	Chr17:6388690-6406424 (+)
JF1/MsJ	ENSUMUG00000036561	lncRNA gene	Chr17:6641638-6659470 (+)
LP/J	ENSMUSG00230034209	lncRNA gene	Chr17:8495466-8513200 (+)
NOD/ShiLtJ	ENSMUSG00190035844	lncRNA gene	Chr17:6489791-6507609 (+)
NZO/HlLtJ	ENSMUSG00225049000	lncRNA gene	Chr17:10414248-10431981 (+)
PWK/PhJ	ENSLUMG00010019469	lncRNA gene	Chr17:6475799-6493621 (+)
SPRET/EiJ	ENSMSPG00010039110	lncRNA gene	Chr17:7188489-7206118 (-)
WSB/EiJ	ENSIUOG00005014825	lncRNA gene	Chr17:6383114-6400822 (+)

Homology

• Gene Tree
  Gm49808
  

Human Diseases

• References
  6 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  372 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm49808
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117110 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117110	Ensembl Gene Model | MGI Sequence Detail	18496	C57BL/6J
transcript	ENSMUST00000233332	Ensembl | MGI Sequence Detail	806	Not Applicable

References

• Summaries
  All 373

  Diseases 6

  Phenotypes 372
• Earliest
  J:30229 Davisson MT, et al., Segmental trisomy as a mouse model for Down syndrome. Prog Clin Biol Res. 1993;384:117-33
• Latest
  J:391449 Thibodeau J, et al., Loss of cystathionine-beta-synthase contributes to elevated OXPHOS, a vulnerability in Ara-C-resistant Myeloid Leukemia in Down syndrome. Biochem Pharmacol. 2026 Feb 13;247:117815

TSS for Gm49808:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142566	Chr17:10083530-10083557 (+)	196 bp