Gm49772 Pseudogene Detail

Summary

• Symbol
  Gm49772
• Name
  predicted gene, 49772

• Feature Type
  pseudogene
• IDs
  MGI:6215285
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:12659135-12659279 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215285	pseudogene	Chr19:12659135-12659279 (+)
129S1/SvImJ	ENSMUSG00200053151	pseudogene	Chr19:9349740-9349884 (+)
A/J	ENSMUSG00195053525	pseudogene	Chr19:9482766-9482910 (+)
AKR/J	ENSMUSG00220051339	pseudogene	Chr19:9459754-9459898 (+)
BALB/cJ	ENSMUSG00180052239	pseudogene	Chr19:9847352-9847496 (+)
C3H/HeJ	ENSMUSG00175015207	pseudogene	Chr19:9197557-9197701 (+)
C57BL/6NJ	ENSMUSG00215048941	pseudogene	Chr19:9260492-9260636 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045297	pseudogene	Chr19:9046209-9046353 (+)
CBA/J	ENSMUSG00210050428	pseudogene	Chr19:9396033-9396177 (+)
DBA/2J	ENSMUSG00185052936	pseudogene	Chr19:9806114-9806258 (+)
FVB/NJ	ENSMUSG00205053587	pseudogene	Chr19:9236994-9237138 (+)
JF1/MsJ	ENSUMUG00000056577	pseudogene	Chr19:9892776-9892920 (+)
LP/J	ENSMUSG00230021596	pseudogene	Chr19:10717408-10717552 (+)
NOD/ShiLtJ	ENSMUSG00190053320	pseudogene	Chr19:9207268-9207412 (+)
NZO/HlLtJ	ENSMUSG00225046557	pseudogene	Chr19:14426416-14426560 (+)
PWK/PhJ	ENSLUMG00010009132	pseudogene	Chr19:9304181-9304325 (+)
SPRET/EiJ	ENSMSPG00010051204	pseudogene	Chr19:9248871-9249015 (+)
WSB/EiJ	ENSIUOG00005051359	pseudogene	Chr19:8901921-8902065 (+)

Homology

• Gene Tree
  Gm49772
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000109309 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109309	Ensembl Gene Model | MGI Sequence Detail	145	C57BL/6J
transcript	ENSMUST00000208407	Ensembl | MGI Sequence Detail	145	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;