Gm49766 Gene Detail

Summary

• Symbol
  Gm49766
• Name
  predicted gene, 49766

• Feature Type
  lncRNA gene
• IDs
  MGI:6215275
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:67621521-67672231 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1723 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215275	lncRNA gene	Chr10:67621521-67672231 (+)
129S1/SvImJ	ENSMUSG00200017796	lncRNA gene	Chr10:64318130-64368786 (+)
A/J	ENSMUSG00195006136	lncRNA gene	Chr10:64612418-64663091 (+)
AKR/J	ENSMUSG00220030422	lncRNA gene	Chr10:64281200-64331872 (+)
BALB/cJ	ENSMUSG00180007953	lncRNA gene	Chr10:64646931-64697596 (+)
C3H/HeJ	ENSMUSG00175012850	lncRNA gene	Chr10:64499459-64550107 (+)
C57BL/6NJ	ENSMUSG00215004072	lncRNA gene	Chr10:64256487-64307142 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027353	lncRNA gene	Chr10:64228469-64277873 (+)
CBA/J	ENSMUSG00210009822	lncRNA gene	Chr10:64361268-64411932 (+)
DBA/2J	ENSMUSG00185020735	lncRNA gene	Chr10:64724084-64774775 (+)
FVB/NJ	ENSMUSG00205007463	lncRNA gene	Chr10:64425411-64476154 (+)
JF1/MsJ	ENSUMUG00000025176	lncRNA gene	Chr10:65921314-65970874 (+)
LP/J	ENSMUSG00230019947	lncRNA gene	Chr10:66490538-66541177 (+)
NOD/ShiLtJ	ENSMUSG00190007998	lncRNA gene	Chr10:64719723-64770464 (+)
NZO/HlLtJ	ENSMUSG00225045215	lncRNA gene	Chr10:70778754-70829435 (+)
PWK/PhJ	ENSLUMG00010007934	lncRNA gene	Chr10:64317460-64374856 (+)
SPRET/EiJ	ENSMSPG00010023118	lncRNA gene	Chr10:65974709-66024231 (+)
WSB/EiJ	ENSIUOG00005034841	lncRNA gene	Chr10:64254878-64305124 (+)

Homology

• Gene Tree
  Gm49766
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54

• Ensembl
  ENSMUSG00000116971 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116971	Ensembl Gene Model | MGI Sequence Detail	50711	C57BL/6J
transcript	ENSMUST00000341486	Ensembl | MGI Sequence Detail	2013	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49766:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93864	Chr10:67633765-67633767 (+)	12,245 bp