Gm49761 Gene Detail

Summary

• Symbol
  Gm49761
• Name
  predicted gene, 49761

• Feature Type
  lncRNA gene
• IDs
  MGI:6215266
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:21112290-21165434 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1475 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215266	lncRNA gene	Chr17:21112290-21165434 (-)
129S1/SvImJ	ENSMUSG00200038345	lncRNA gene	Chr17:16586774-16639913 (-)
A/J	ENSMUSG00195037776	lncRNA gene	Chr17:17474675-17527819 (-)
AKR/J	ENSMUSG00220027678	lncRNA gene	Chr17:16781850-16834921 (-)
BALB/cJ	ENSMUSG00180019740	lncRNA gene	Chr17:16771432-16824572 (-)
C3H/HeJ	ENSMUSG00175044686	lncRNA gene	Chr17:16630285-16683362 (-)
C57BL/6NJ	ENSMUSG00215043585	lncRNA gene	Chr17:16581391-16634519 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023745	lncRNA gene	Chr17:17191728-17274814 (-)
CBA/J	ENSMUSG00210041773	lncRNA gene	Chr17:16438221-16491299 (-)
DBA/2J	ENSMUSG00185040309	lncRNA gene	Chr17:18608773-18661919 (-)
FVB/NJ	ENSMUSG00205034957	lncRNA gene	Chr17:17177412-17230481 (-)
JF1/MsJ	ENSUMUG00000039545	lncRNA gene	Chr17:17844780-17897957 (-)
LP/J	ENSMUSG00230027021	lncRNA gene	Chr17:20006806-20059937 (-)
NOD/ShiLtJ	ENSMUSG00190042930	lncRNA gene	Chr17:16799156-16852278 (-)
NZO/HlLtJ	ENSMUSG00225054721	lncRNA gene	Chr17:21960498-22013637 (-)
PWK/PhJ	ENSLUMG00010021981	lncRNA gene	Chr17:16101443-16154095 (-)
SPRET/EiJ	ENSMSPG00010042398	lncRNA gene	Chr17:17369726-17454960 (-)
WSB/EiJ	ENSIUOG00005039955	lncRNA gene	Chr17:17376433-17429542 (-)

Homology

• Gene Tree
  Gm49761
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm49761
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000116974 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116974	Ensembl Gene Model | MGI Sequence Detail	53145	C57BL/6J
transcript	ENSMUST00000304217	Ensembl | MGI Sequence Detail	1054	Not Applicable

References

• Summaries
  All 17

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964

TSS for Gm49761:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146588	Chr17:21165324-21165390 (-)	77 bp