Gm49760 Pseudogene Detail

Summary

• Symbol
  Gm49760
• Name
  predicted gene, 49760

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:6215265
  NCBI Gene: 115488002
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:18698215-18699999 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215265	pseudogene	Chr12:18686059-18701702 (+)
129S1/SvImJ	ENSMUSG00200024089	pseudogene	Chr12:15079266-15081134 (+)
A/J	ENSMUSG00195021622	pseudogene	Chr12:15752278-15754062 (+)
AKR/J	ENSMUSG00220029942	pseudogene	Chr12:16222146-16224182 (+)
BALB/cJ	ENSMUSG00180010422	pseudogene	Chr12:15764229-15766013 (+)
C3H/HeJ	ENSMUSG00175005926	pseudogene	Chr12:15138700-15140565 (+)
C57BL/6NJ	ENSMUSG00215005655	pseudogene	Chr12:17007721-17009505 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006175	pseudogene	Chr12:14739316-14740848 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185004355	pseudogene	Chr12:19230164-19232200 (-)
DBA/2J	ENSMUSG00185004359	pseudogene	Chr12:18708173-18709789 (+)
DBA/2J	ENSMUSG00185004352	pseudogene	Chr12:17357945-17359729 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000008348	pseudogene	Chr12:15597593-15599377 (+)
LP/J	ENSMUSG00230021768	pseudogene	Chr12:17504150-17505934 (+)
NOD/ShiLtJ	ENSMUSG00190008091	pseudogene	Chr12:629396-631123 (-)
NZO/HlLtJ	ENSMUSG00225030227	pseudogene	Chr12:19608747-19610531 (+)
PWK/PhJ	ENSLUMG00010004420	pseudogene	Chr12:15392902-15394686 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm49760
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000116815 (Evidence)
• NCBI Gene
  115488002

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116815	Ensembl Gene Model | MGI Sequence Detail	1785	C57BL/6J
transcript	ENSMUST00000232086	Ensembl | MGI Sequence Detail	1785	Not Applicable
polypeptide	XP_036013672	RefSeq | MGI Sequence Detail	417	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;