Gm49754 Gene Detail

Summary

• Symbol
  Gm49754
• Name
  predicted gene, 49754

• Feature Type
  lncRNA gene
• IDs
  MGI:6215253
  NCBI Gene: 118568266
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:30608169-30612073 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215253	lncRNA gene	Chr16:30599585-30612099 (-)
129S1/SvImJ	ENSMUSG00200036307	lncRNA gene	Chr16:27626436-27629718 (-)
A/J	ENSMUSG00195029757	lncRNA gene	Chr16:27175588-27178898 (-)
AKR/J	ENSMUSG00220034995	lncRNA gene	Chr16:27458953-27462263 (-)
BALB/cJ	ENSMUSG00180031142	lncRNA gene	Chr16:27396628-27399938 (-)
C3H/HeJ	ENSMUSG00175038033	lncRNA gene	Chr16:27543519-27546829 (-)
C57BL/6NJ	ENSMUSG00215024520	lncRNA gene	Chr16:27413016-27416326 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035951	lncRNA gene	Chr16:27818267-27821549 (-)
CBA/J	ENSMUSG00210038226	lncRNA gene	Chr16:27585555-27588865 (-)
DBA/2J	ENSMUSG00185019808	lncRNA gene	Chr16:27501001-27504311 (-)
FVB/NJ	ENSMUSG00205025031	lncRNA gene	Chr16:27512289-27515599 (-)
JF1/MsJ	ENSUMUG00000038390	lncRNA gene	Chr16:27680769-27684084 (-)
LP/J	ENSMUSG00230034885	lncRNA gene	Chr16:30069851-30073161 (-)
NOD/ShiLtJ	ENSMUSG00190037141	lncRNA gene	Chr16:27690852-27694162 (-)
NZO/HlLtJ	ENSMUSG00225040434	lncRNA gene	Chr16:33308979-33312281 (-)
PWK/PhJ	ENSLUMG00010036634	lncRNA gene	Chr16:27514211-27517525 (-)
SPRET/EiJ	ENSMSPG00010020152	lncRNA gene	Chr16:27482513-27485808 (-)
WSB/EiJ	ENSIUOG00005035344	lncRNA gene	Chr16:27657758-27661060 (-)

Homology

• Gene Tree
  Gm49754
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000116570 (Evidence)
• NCBI Gene
  118568266

Representative Sequences			Length	Strain/Species
genomic	118568266	NCBI Gene Model | MGI Sequence Detail	3905	C57BL/6J
transcript	XR_004939334	RefSeq | MGI Sequence Detail	486	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;