Gm49747 Gene Detail

Summary

• Symbol
  Gm49747
• Name
  predicted gene, 49747

• Feature Type
  lncRNA gene
• IDs
  MGI:6215240
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:55881061-55892446 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  276 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215240	lncRNA gene	Chr14:55881061-55892446 (+)
129S1/SvImJ	ENSMUSG00200042747	lncRNA gene	Chr14:44468764-44471514 (+)
A/J	ENSMUSG00195036096	lncRNA gene	Chr14:44685487-44688237 (+)
AKR/J	ENSMUSG00220036628	lncRNA gene	Chr14:44013388-44016136 (+)
BALB/cJ	ENSMUSG00180053733	lncRNA gene	Chr14:44309204-44311956 (+)
C3H/HeJ	ENSMUSG00175051386	lncRNA gene	Chr14:45991548-45994298 (+)
C57BL/6NJ	ENSMUSG00215049512	lncRNA gene	Chr14:44204273-44207021 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050580	lncRNA gene	Chr14:45986676-45989853 (+)
CBA/J	ENSMUSG00210049109	lncRNA gene	Chr14:44672084-44674838 (+)
DBA/2J	ENSMUSG00185056182	lncRNA gene	Chr14:49739332-49742070 (+)
FVB/NJ	ENSMUSG00205046942	lncRNA gene	Chr14:44082630-44085356 (+)
JF1/MsJ	ENSUMUG00000047300	lncRNA gene	Chr14:60971276-60974485 (+)
LP/J	ENSMUSG00230053436	lncRNA gene	Chr14:61834632-61837382 (+)
NOD/ShiLtJ	ENSMUSG00190048873	lncRNA gene	Chr14:44446022-44448748 (+)
NZO/HlLtJ	ENSMUSG00225047014	lncRNA gene	Chr14:52124998-52127746 (+)
PWK/PhJ	ENSLUMG00010051735	lncRNA gene	Chr14:43894738-43897488 (+)
SPRET/EiJ	ENSMSPG00010047896	lncRNA gene	Chr14:47298847-47301763 (+)
WSB/EiJ	ENSIUOG00005045656	lncRNA gene	Chr14:43886718-43889441 (+)

Homology

• Gene Tree
  Gm49747
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000115222 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115222	Ensembl Gene Model | MGI Sequence Detail	11386	C57BL/6J
transcript	ENSMUST00000228007	Ensembl | MGI Sequence Detail	2750	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49747:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125797	Chr14:55881085-55881123 (+)	43 bp