Gm49746 Pseudogene Detail

Summary

• Symbol
  Gm49746
• Name
  predicted gene, 49746

• Feature Type
  pseudogene
• IDs
  MGI:6215239
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:20390160-20390432 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215239	pseudogene	Chr16:20390160-20390432 (+)
129S1/SvImJ	ENSMUSG00200048408	pseudogene	Chr16:17387637-17387909 (+)
A/J	ENSMUSG00195035305	pseudogene	Chr16:16945186-16945458 (+)
AKR/J	ENSMUSG00220046065	pseudogene	Chr16:17262855-17263127 (+)
BALB/cJ	ENSMUSG00180040789	pseudogene	Chr16:17186430-17186702 (+)
C3H/HeJ	ENSMUSG00175051257	pseudogene	Chr16:17331498-17331770 (+)
C57BL/6NJ	ENSMUSG00215041288	pseudogene	Chr16:17052444-17052716 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045946	pseudogene	Chr16:17667146-17667418 (+)
CBA/J	ENSMUSG00210048208	pseudogene	Chr16:17353263-17353535 (+)
DBA/2J	ENSMUSG00185034676	pseudogene	Chr16:17292016-17292288 (+)
FVB/NJ	ENSMUSG00205048394	pseudogene	Chr16:17294752-17295024 (+)
JF1/MsJ	ENSUMUG00000053780	pseudogene	Chr16:17490374-17490646 (+)
LP/J	ENSMUSG00230047836	pseudogene	Chr16:19871269-19871541 (+)
NOD/ShiLtJ	ENSMUSG00190050490	pseudogene	Chr16:17433529-17433801 (+)
NZO/HlLtJ	ENSMUSG00225038802	pseudogene	Chr16:23117060-23117332 (+)
PWK/PhJ	ENSLUMG00010049360	pseudogene	Chr16:17317857-17318129 (+)
SPRET/EiJ	ENSMSPG00010048283	pseudogene	Chr16:17178175-17178448 (+)
WSB/EiJ	ENSIUOG00005046287	pseudogene	Chr16:17488363-17488635 (+)

Homology

• Gene Tree
  Gm49746
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116538 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116538	Ensembl Gene Model | MGI Sequence Detail	273	C57BL/6J
transcript	ENSMUST00000231937	Ensembl | MGI Sequence Detail	273	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;