Gm49735 Gene Detail

Summary

• Symbol
  Gm49735
• Name
  predicted gene, 49735

• Feature Type
  lncRNA gene
• IDs
  MGI:6215221
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:43514456-43531195 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  455 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215221	lncRNA gene	Chr16:43514456-43531195 (-)
129S1/SvImJ	ENSMUSG00200029412	lncRNA gene	Chr16:40412872-40429607 (-)
A/J	ENSMUSG00195011174	lncRNA gene	Chr16:39982469-39999198 (-)
AKR/J	ENSMUSG00220028798	lncRNA gene	Chr16:40321177-40338119 (-)
BALB/cJ	ENSMUSG00180013233	lncRNA gene	Chr16:40188991-40205722 (-)
C3H/HeJ	ENSMUSG00175031796	lncRNA gene	Chr16:40468361-40485089 (-)
C57BL/6NJ	ENSMUSG00215022254	lncRNA gene	Chr16:40294383-40311118 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012979	lncRNA gene	Chr16:40737690-40754674 (-)
CBA/J	ENSMUSG00210028731	lncRNA gene	Chr16:40491154-40507883 (-)
DBA/2J	ENSMUSG00185024829	lncRNA gene	Chr16:40368725-40385452 (-)
FVB/NJ	ENSMUSG00205025119	lncRNA gene	Chr16:40322821-40339558 (-)
JF1/MsJ	ENSUMUG00000038270	lncRNA gene	Chr16:40614196-40631211 (-)
LP/J	ENSMUSG00230029799	lncRNA gene	Chr16:42966121-42982850 (-)
NOD/ShiLtJ	ENSMUSG00190018927	lncRNA gene	Chr16:40498510-40515237 (-)
NZO/HlLtJ	ENSMUSG00225028933	lncRNA gene	Chr16:46052044-46068775 (-)
PWK/PhJ	ENSLUMG00010027883	lncRNA gene	Chr16:40510113-40527206 (-)
SPRET/EiJ	ENSMSPG00010007466	lncRNA gene	Chr16:40549720-40566785 (-)
WSB/EiJ	ENSIUOG00005013606	lncRNA gene	Chr16:40608849-40625593 (-)

Homology

• Gene Tree
  Gm49735
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000116684 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116684	Ensembl Gene Model | MGI Sequence Detail	16740	C57BL/6J
transcript	ENSMUST00000350221	Ensembl | MGI Sequence Detail	689	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49735:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141147	Chr16:43519769-43519815 (-)	11,403 bp
Tssr141146	Chr16:43519316-43519325 (-)	11,874 bp