Gm49729 Gene Detail

Summary

• Symbol
  Gm49729
• Name
  predicted gene, 49729

• Feature Type
  lncRNA gene
• IDs
  MGI:6215210
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:24214796-24375761 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4906 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215210	lncRNA gene	Chr15:24214796-24375761 (-)
129S1/SvImJ	ENSMUSG00200028466	lncRNA gene	Chr15:21274321-21395125 (-)
A/J	ENSMUSG00195014519	lncRNA gene	Chr15:21221597-21346187 (-)
AKR/J	ENSMUSG00220047823	lncRNA gene	Chr15:21061872-21184108 (-)
BALB/cJ	ENSMUSG00180005416	lncRNA gene	Chr15:21146067-21266855 (-)
C3H/HeJ	ENSMUSG00175004743	lncRNA gene	Chr15:21272644-21393454 (-)
C57BL/6NJ	ENSMUSG00215005095	lncRNA gene	Chr15:21201936-21322765 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014975	lncRNA gene	Chr15:21273791-21389816 (-)
CBA/J	ENSMUSG00210024379	lncRNA gene	Chr15:21264748-21385594 (-)
DBA/2J	ENSMUSG00185024140	lncRNA gene	Chr15:21257326-21378142 (-)
FVB/NJ	ENSMUSG00205014574	lncRNA gene	Chr15:21189955-21308947 (-)
JF1/MsJ	ENSUMUG00000013739	lncRNA gene	Chr15:21299316-21410442 (-)
LP/J	ENSMUSG00230015504	lncRNA gene	Chr15:24744104-24864885 (-)
NOD/ShiLtJ	ENSMUSG00190012447	lncRNA gene	Chr15:21219807-21340585 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010022035	lncRNA gene	Chr15:21420280-21527732 (-)
SPRET/EiJ	ENSMSPG00010023932	lncRNA gene	Chr15:21758877-21880623 (-)
WSB/EiJ	ENSIUOG00005021314	lncRNA gene	Chr15:21265211-21385922 (-)

Homology

• Gene Tree
  Gm49729
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000115198 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115198	Ensembl Gene Model | MGI Sequence Detail	160966	C57BL/6J
transcript	ENSMUST00000228438	Ensembl | MGI Sequence Detail	1456	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49729:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133812	Chr15:24307002-24307004 (-)	68,758 bp