Gm49701 Gene Detail

Summary

• Symbol
  Gm49701
• Name
  predicted gene, 49701

• Feature Type
  lncRNA gene
• IDs
  MGI:6215160
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:58471853-58475607 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215160	lncRNA gene	Chr16:58471853-58475607 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215007441	lncRNA gene	Chr9:297615-301349 (-)
C57BL/6NJ	ENSMUSG00215035989	lncRNA gene	Chr7:77054590-77058353 (-)
C57BL/6NJ	ENSMUSG00215036818	lncRNA gene	Chr3:101767588-101773248 (-)
C57BL/6NJ	ENSMUSG00215001464	lncRNA gene	Chr3:10928839-10932593 (-)
C57BL/6NJ	ENSMUSG00215027122	lncRNA gene	Chr16:8157152-8160932 (+)
C57BL/6NJ	ENSMUSG00215007843	lncRNA gene	Chr14:96651752-96655576 (+)
C57BL/6NJ	ENSMUSG00215024940	lncRNA gene	Chr4:96356260-96360014 (-)
C57BL/6NJ	ENSMUSG00215024485	lncRNA gene	Chr16:55278815-55282569 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210019654	lncRNA gene	Chr16:55443756-55447750 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230009137	lncRNA gene	Chr16:57882716-57886660 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225036042	lncRNA gene	Chr16:61007794-61011548 (-)
NZO/HlLtJ	ENSMUSG00225006035	lncRNA gene	Chr1:19745986-19749827 (+)
NZO/HlLtJ	ENSMUSG00225022561	lncRNA gene	Chr10:93866509-93870406 (+)
NZO/HlLtJ	ENSMUSG00225021994	lncRNA gene	Chr14:104594137-104597961 (+)
NZO/HlLtJ	ENSMUSG00225024217	lncRNA gene	Chr5:142926121-142929954 (-)
NZO/HlLtJ	ENSMUSG00225017789	lncRNA gene	Chr9:761927-765661 (-)
NZO/HlLtJ	ENSMUSG00225022707	lncRNA gene	Chr7:2210450-2216110 (+)
NZO/HlLtJ	ENSMUSG00225032576	lncRNA gene	Chr16:14218654-14222434 (+)
PWK/PhJ	ENSLUMG00010011980	lncRNA gene	Chr16:55342358-55346378 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm49701
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000116579 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116579	Ensembl Gene Model | MGI Sequence Detail	3755	C57BL/6J
transcript	ENSMUST00000231734	Ensembl | MGI Sequence Detail	715	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;