Gm49697 Pseudogene Detail

Summary

• Symbol
  Gm49697
• Name
  predicted gene, 49697

• Feature Type
  pseudogene
• IDs
  MGI:6215154
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:20362516-20362641 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  55 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215154	pseudogene	Chr12:20362516-20362641 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195020805	pseudogene	Chr12:17950209-17950334 (-)
AKR/J	ENSMUSG00220031498	pseudogene	Chr12:16054229-16054354 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215006636	pseudogene	Chr12:14900367-14900492 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006427	pseudogene	Chr12:14574209-14574334 (+)
CBA/J	ENSMUSG00210008177	pseudogene	Chr12:15637021-15637145 (-)
DBA/2J	ENSMUSG00185004223	pseudogene	Chr12:16632292-16632416 (-)
DBA/2J	ENSMUSG00185004196	pseudogene	Chr12:17932454-17932579 (-)
FVB/NJ	ENSMUSG00205002044	pseudogene	Chr12:16048610-16048735 (-)
JF1/MsJ	ENSUMUG00000010643	pseudogene	Chr12:17291281-17291406 (+)
JF1/MsJ	ENSUMUG00000008392	pseudogene	Chr12:20841931-20842055 (-)
LP/J	ENSMUSG00230008297	pseudogene	Chr12:21771996-21772120 (-)
LP/J	ENSMUSG00230007089	pseudogene	Chr12:24899094-24899219 (-)
LP/J	ENSMUSG00230008203	pseudogene	Chr12:20897239-20897364 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225035594	pseudogene	Chr12:23099814-23099939 (-)
NZO/HlLtJ	ENSMUSG00225034788	pseudogene	Chr12:27082182-27082307 (-)
NZO/HlLtJ	ENSMUSG00225035703	pseudogene	Chr12:23974544-23974668 (-)
PWK/PhJ	ENSLUMG00010005208	pseudogene	Chr12:17119471-17119596 (-)
SPRET/EiJ	ENSMSPG00010003422	pseudogene	Chr12:17792908-17793033 (-)
WSB/EiJ	ENSIUOG00005001766	pseudogene	Chr12:15943471-15943596 (+)

Homology

• Gene Tree
  Gm49697
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000116558 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116558	Ensembl Gene Model | MGI Sequence Detail	126	C57BL/6J
transcript	ENSMUST00000231862	Ensembl | MGI Sequence Detail	126	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;