Gm49695 Gene Detail

Summary

• Symbol
  Gm49695
• Name
  predicted gene, 49695

• Feature Type
  lncRNA gene
• IDs
  MGI:6215150
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:31278842-31314993 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1045 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215150	lncRNA gene	Chr16:31278842-31314993 (+)
129S1/SvImJ	ENSMUSG00200036803	lncRNA gene	Chr16:28310209-28316631 (+)
A/J	ENSMUSG00195030475	lncRNA gene	Chr16:27852220-27858638 (+)
AKR/J	ENSMUSG00220033751	lncRNA gene	Chr16:28153513-28159936 (+)
BALB/cJ	ENSMUSG00180030766	lncRNA gene	Chr16:28073268-28079684 (+)
C3H/HeJ	ENSMUSG00175038925	lncRNA gene	Chr16:28224326-28230753 (+)
C57BL/6NJ	ENSMUSG00215022472	lncRNA gene	Chr16:28093813-28100240 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037158	lncRNA gene	Chr16:28495214-28501637 (+)
CBA/J	ENSMUSG00210040043	lncRNA gene	Chr16:28266326-28272753 (+)
DBA/2J	ENSMUSG00185019605	lncRNA gene	Chr16:28181799-28188226 (+)
FVB/NJ	ENSMUSG00205025555	lncRNA gene	Chr16:28188907-28195323 (+)
JF1/MsJ	ENSUMUG00000044283	lncRNA gene	Chr16:28358252-28364785 (+)
LP/J	ENSMUSG00230033187	lncRNA gene	Chr16:30750560-30756987 (+)
NOD/ShiLtJ	ENSMUSG00190036541	lncRNA gene	Chr16:28371373-28377792 (+)
NZO/HlLtJ	ENSMUSG00225039717	lncRNA gene	Chr16:33989350-33995769 (+)
PWK/PhJ	ENSLUMG00010035052	lncRNA gene	Chr16:28186984-28193182 (+)
SPRET/EiJ	ENSMSPG00010019250	lncRNA gene	Chr16:28157462-28163999 (+)
WSB/EiJ	ENSIUOG00005036030	lncRNA gene	Chr16:28344299-28350722 (+)

Homology

• Gene Tree
  Gm49695
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm49695
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000116572 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116572	Ensembl Gene Model | MGI Sequence Detail	36152	C57BL/6J
transcript	ENSMUST00000232608	Ensembl | MGI Sequence Detail	2301	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:294006 Rutkowski TP, et al., Behavioral changes and growth deficits in a CRISPR engineered mouse model of the schizophrenia-associated 3q29 deletion. Mol Psychiatry. 2021 Mar;26(3):772-783
• Latest
  J:327759 Pollak RM, et al., Metabolic effects of the schizophrenia-associated 3q29 deletion. Transl Psychiatry. 2022 Feb 17;12(1):66