Gm49692 Gene Detail

Summary

• Symbol
  Gm49692
• Name
  predicted gene, 49692

• Feature Type
  lncRNA gene
• IDs
  MGI:6215145
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:20241901-20359079 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1087 from dbSNP Build 142
• Strain Annotations
  38

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215145	lncRNA gene	Chr12:20241901-20359079 (+)
129S1/SvImJ	ENSMUSG00200023350	lncRNA gene	Chr12:15301650-15302904 (+)
A/J	ENSMUSG00195020826	lncRNA gene	Chr12:15086891-15088153 (+)
A/J	ENSMUSG00195020811	lncRNA gene	Chr12:17232901-17351930 (-)
A/J	ENSMUSG00195020840	lncRNA gene	Chr12:16142195-16143438 (+)
AKR/J	ENSMUSG00220031612	lncRNA gene	Chr12:16177017-16178338 (+)
BALB/cJ	ENSMUSG00180010547	lncRNA gene	Chr12:15098790-15100052 (+)
BALB/cJ	ENSMUSG00180010553	lncRNA gene	Chr12:16032409-16033667 (+)
BALB/cJ	ENSMUSG00180010539	lncRNA gene	Chr12:17123040-17185310 (-)
BALB/cJ	ENSMUSG00180010564	lncRNA gene	Chr12:17652588-17653862 (+)
C3H/HeJ	ENSMUSG00175005884	lncRNA gene	Chr12:15101285-15102547 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006429	lncRNA gene	Chr12:15478964-15612828 (-)
CAST/EiJ	ENSTCUG00005006433	lncRNA gene	Chr12:14569052-14697604 (+)
CAST/EiJ	ENSTCUG00005006606	lncRNA gene	Chr12:15967140-15968398 (-)
CAST/EiJ	ENSTCUG00005006431	lncRNA gene	Chr12:17610854-17720386 (-)
CBA/J	ENSMUSG00210008182	lncRNA gene	Chr12:16267883-16394413 (-)
DBA/2J	ENSMUSG00185004204	lncRNA gene	Chr12:17936020-18057909 (-)
DBA/2J	ENSMUSG00185004605	lncRNA gene	Chr12:18922732-18993901 (-)
FVB/NJ	ENSMUSG00205002054	lncRNA gene	Chr12:16052175-16053460 (-)
JF1/MsJ	ENSUMUG00000008826	lncRNA gene	Chr12:23143804-23233535 (-)
JF1/MsJ	ENSUMUG00000008598	lncRNA gene	Chr12:21599245-21600504 (-)
JF1/MsJ	ENSUMUG00000010655	lncRNA gene	Chr12:17170667-17287844 (+)
LP/J	ENSMUSG00230008491	lncRNA gene	Chr12:25889319-25960482 (-)
LP/J	ENSMUSG00230008244	lncRNA gene	Chr12:20900803-21009110 (-)
LP/J	ENSMUSG00230007160	lncRNA gene	Chr12:24902660-25024546 (-)
NOD/ShiLtJ	ENSMUSG00190008346	lncRNA gene	Chr12:1033350-1141350 (-)
NOD/ShiLtJ	ENSMUSG00190008342	lncRNA gene	Chr12:775814-904081 (-)
NOD/ShiLtJ	ENSMUSG00190014278	lncRNA gene	Chr12:16347634-16348935 (-)
NZO/HlLtJ	ENSMUSG00225035883	lncRNA gene	Chr12:28072403-28143570 (-)
NZO/HlLtJ	ENSMUSG00225035613	lncRNA gene	Chr12:23103378-23211684 (-)
NZO/HlLtJ	ENSMUSG00225034842	lncRNA gene	Chr12:27085748-27207638 (-)
PWK/PhJ	ENSLUMG00010005211	lncRNA gene	Chr12:17578065-17698140 (-)
PWK/PhJ	ENSLUMG00010005215	lncRNA gene	Chr12:14726241-14727503 (+)
PWK/PhJ	ENSLUMG00010005286	lncRNA gene	Chr12:15916564-15917820 (+)
SPRET/EiJ	ENSMSPG00010003437	lncRNA gene	Chr12:16261037-16383533 (+)
SPRET/EiJ	ENSMSPG00010003431	lncRNA gene	Chr12:17796530-17797772 (-)
WSB/EiJ	ENSIUOG00005001769	lncRNA gene	Chr12:15938792-15940043 (+)
WSB/EiJ	ENSIUOG00005001767	lncRNA gene	Chr12:15582428-15583900 (-)

Homology

• Gene Tree
  Gm49692
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40

• Ensembl
  ENSMUSG00000116736 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116736	Ensembl Gene Model | MGI Sequence Detail	117179	C57BL/6J
transcript	ENSMUST00000232183	Ensembl | MGI Sequence Detail	1303	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9