Gm49691 Gene Detail

Summary

• Symbol
  Gm49691
• Name
  predicted gene, 49691

• Feature Type
  lncRNA gene
• IDs
  MGI:6215143
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:21642911-21670573 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  683 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215143	lncRNA gene	Chr17:21642911-21670573 (-)
129S1/SvImJ	ENSMUSG00200038781	lncRNA gene	Chr17:17190798-17218047 (-)
A/J	ENSMUSG00195039226	lncRNA gene	Chr17:18055084-18082333 (-)
AKR/J	ENSMUSG00220026407	lncRNA gene	Chr17:17262584-17290268 (-)
BALB/cJ	ENSMUSG00180018166	lncRNA gene	Chr17:17345332-17372569 (-)
C3H/HeJ	ENSMUSG00175044319	lncRNA gene	Chr17:17111028-17138707 (-)
C57BL/6NJ	ENSMUSG00215043387	lncRNA gene	Chr17:17135211-17162836 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023520	lncRNA gene	Chr17:17687299-17717205 (-)
CBA/J	ENSMUSG00210040892	lncRNA gene	Chr17:16918939-16946633 (-)
DBA/2J	ENSMUSG00185040001	lncRNA gene	Chr17:19151524-19178769 (-)
FVB/NJ	ENSMUSG00205034225	lncRNA gene	Chr17:17635023-17662688 (-)
JF1/MsJ	ENSUMUG00000038420	lncRNA gene	Chr17:18312123-18341384 (-)
LP/J	ENSMUSG00230026953	lncRNA gene	Chr17:20549533-20576770 (-)
NOD/ShiLtJ	ENSMUSG00190041819	lncRNA gene	Chr17:17301583-17329201 (-)
NZO/HlLtJ	ENSMUSG00225054704	lncRNA gene	Chr17:22472567-22499811 (-)
PWK/PhJ	ENSLUMG00010020705	lncRNA gene	Chr17:16581427-16611327 (-)
SPRET/EiJ	ENSMSPG00010042833	lncRNA gene	Chr17:18002560-18025465 (-)
WSB/EiJ	ENSIUOG00005042703	lncRNA gene	Chr17:17891476-17918915 (-)

Homology

• Gene Tree
  Gm49691
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm49691
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116771 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116771	Ensembl Gene Model | MGI Sequence Detail	27663	C57BL/6J
transcript	ENSMUST00000232563	Ensembl | MGI Sequence Detail	1156	Not Applicable

References

• Summaries
  All 17

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964

TSS for Gm49691:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146589	Chr17:21670518-21670535 (-)	46 bp