Gm49688 Gene Detail

Summary

• Symbol
  Gm49688
• Name
  predicted gene, 49688

• Feature Type
  lncRNA gene
• IDs
  MGI:6215139
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:88393426-88435102 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1609 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215139	lncRNA gene	Chr16:88393426-88435102 (+)
129S1/SvImJ	ENSMUSG00200037922	lncRNA gene	Chr16:85283581-85313248 (+)
A/J	ENSMUSG00195029299	lncRNA gene	Chr16:85084591-85114137 (+)
AKR/J	ENSMUSG00220016055	lncRNA gene	Chr16:85276313-85305884 (+)
BALB/cJ	ENSMUSG00180016416	lncRNA gene	Chr16:85157884-85187432 (+)
C3H/HeJ	ENSMUSG00175016168	lncRNA gene	Chr16:85496109-85525657 (+)
C57BL/6NJ	ENSMUSG00215032211	lncRNA gene	Chr16:85286519-85316064 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020297	lncRNA gene	Chr16:84853942-84883336 (+)
CBA/J	ENSMUSG00210043428	lncRNA gene	Chr16:85386582-85416146 (+)
DBA/2J	ENSMUSG00185035170	lncRNA gene	Chr16:85337910-85367473 (+)
FVB/NJ	ENSMUSG00205025501	lncRNA gene	Chr16:85134710-85164267 (+)
JF1/MsJ	ENSUMUG00000047767	lncRNA gene	Chr16:85491389-85520808 (+)
LP/J	ENSMUSG00230036091	lncRNA gene	Chr16:87843303-87872964 (+)
NOD/ShiLtJ	ENSMUSG00190029132	lncRNA gene	Chr16:85312356-85341906 (+)
NZO/HlLtJ	ENSMUSG00225031550	lncRNA gene	Chr16:91027993-91057453 (+)
PWK/PhJ	ENSLUMG00010014636	lncRNA gene	Chr16:85133828-85163315 (+)
SPRET/EiJ	ENSMSPG00010030880	lncRNA gene	Chr16:86275189-86302469 (+)
WSB/EiJ	ENSIUOG00005021010	lncRNA gene	Chr16:85272463-85302075 (+)

Homology

• Gene Tree
  Gm49688
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm49688
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000116616 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116616	Ensembl Gene Model | MGI Sequence Detail	41677	C57BL/6J
transcript	ENSMUST00000232360	Ensembl | MGI Sequence Detail	1364	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76

TSS for Gm49688:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139243	Chr16:88405604-88405612 (+)	12,182 bp