Gm49684 Pseudogene Detail

Summary

• Symbol
  Gm49684
• Name
  predicted gene, 49684

• Feature Type
  pseudogene
• IDs
  MGI:6215133
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:17522207-17522964 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  71 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215133	pseudogene	Chr16:17522207-17522964 (+)
129S1/SvImJ	ENSMUSG00200047191	pseudogene	Chr16:14518774-14519531 (+)
A/J	ENSMUSG00195034985	pseudogene	Chr16:14076070-14076827 (+)
AKR/J	ENSMUSG00220045606	pseudogene	Chr16:14392336-14393093 (+)
BALB/cJ	ENSMUSG00180041516	pseudogene	Chr16:14317293-14318050 (+)
C3H/HeJ	ENSMUSG00175050714	pseudogene	Chr16:14462303-14463060 (+)
C57BL/6NJ	ENSMUSG00215043316	pseudogene	Chr16:14183405-14184162 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046255	pseudogene	Chr16:14391593-14392341 (+)
CBA/J	ENSMUSG00210048495	pseudogene	Chr16:14478622-14479379 (+)
DBA/2J	ENSMUSG00185035673	pseudogene	Chr16:14424767-14425524 (+)
FVB/NJ	ENSMUSG00205048534	pseudogene	Chr16:14432387-14433144 (+)
JF1/MsJ	ENSUMUG00000053866	pseudogene	Chr16:14508285-14509042 (+)
LP/J	ENSMUSG00230045865	pseudogene	Chr16:17002668-17003425 (+)
NOD/ShiLtJ	ENSMUSG00190050679	pseudogene	Chr16:14564670-14565427 (+)
NZO/HlLtJ	ENSMUSG00225032215	pseudogene	Chr16:20248481-20249238 (+)
PWK/PhJ	ENSLUMG00010049953	pseudogene	Chr16:14390703-14391460 (+)
SPRET/EiJ	ENSMSPG00010047667	pseudogene	Chr16:14408109-14408866 (+)
WSB/EiJ	ENSIUOG00005044542	pseudogene	Chr16:14558743-14559500 (+)

Homology

• Gene Tree
  Gm49684
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116994 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116994	Ensembl Gene Model | MGI Sequence Detail	758	C57BL/6J
transcript	ENSMUST00000232374	Ensembl | MGI Sequence Detail	758	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49684:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137326	Chr16:17522448-17522464 (+)	249 bp