Gm49679 Pseudogene Detail

Summary

• Symbol
  Gm49679
• Name
  predicted gene, 49679

• Feature Type
  pseudogene
• IDs
  MGI:6215128
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:30271406-30271716 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215128	pseudogene	Chr16:30271406-30271716 (+)
129S1/SvImJ	ENSMUSG00200036212	pseudogene	Chr16:27288010-27288320 (+)
A/J	ENSMUSG00195029875	pseudogene	Chr16:26837852-26838163 (+)
AKR/J	ENSMUSG00220032799	pseudogene	Chr16:27124610-27124921 (+)
BALB/cJ	ENSMUSG00180030384	pseudogene	Chr16:27058904-27059216 (+)
C3H/HeJ	ENSMUSG00175038566	pseudogene	Chr16:27206132-27206442 (+)
C57BL/6NJ	ENSMUSG00215023756	pseudogene	Chr16:27075595-27075905 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037345	pseudogene	Chr16:27474000-27474274 (+)
CBA/J	ENSMUSG00210039374	pseudogene	Chr16:27248154-27248464 (+)
DBA/2J	ENSMUSG00185019377	pseudogene	Chr16:27163610-27163920 (+)
FVB/NJ	ENSMUSG00205025442	pseudogene	Chr16:27174571-27174882 (+)
JF1/MsJ	ENSUMUG00000044006	pseudogene	Chr16:27340858-27341131 (+)
LP/J	ENSMUSG00230034297	pseudogene	Chr16:29732490-29732800 (+)
NOD/ShiLtJ	ENSMUSG00190037743	pseudogene	Chr16:27353166-27353477 (+)
NZO/HlLtJ	ENSMUSG00225040342	pseudogene	Chr16:32970025-32970336 (+)
PWK/PhJ	ENSLUMG00010035248	pseudogene	Chr16:27172220-27172495 (+)
SPRET/EiJ	ENSMSPG00010018905	pseudogene	Chr16:27139686-27139958 (+)
WSB/EiJ	ENSIUOG00005036419	pseudogene	Chr16:27323482-27323792 (+)

Homology

• Gene Tree
  Gm49679
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116960 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116960	Ensembl Gene Model | MGI Sequence Detail	311	C57BL/6J
transcript	ENSMUST00000231864	Ensembl | MGI Sequence Detail	311	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;