Gm49676 Pseudogene Detail

Summary

• Symbol
  Gm49676
• Name
  predicted gene, 49676

• Feature Type
  pseudogene
• IDs
  MGI:6215123
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:74944121-74944717 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215123	pseudogene	Chr16:74944121-74944717 (+)
129S1/SvImJ	ENSMUSG00200016245	pseudogene	Chr16:71830438-71831034 (+)
A/J	ENSMUSG00195023664	pseudogene	Chr16:71612687-71613283 (+)
AKR/J	ENSMUSG00220017946	pseudogene	Chr16:71778825-71779421 (+)
BALB/cJ	ENSMUSG00180002090	pseudogene	Chr16:71680408-71681004 (+)
C3H/HeJ	ENSMUSG00175009019	pseudogene	Chr16:71953767-71954363 (+)
C57BL/6NJ	ENSMUSG00215001734	pseudogene	Chr16:71788329-71788925 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007908	pseudogene	Chr16:71700248-71700844 (+)
CBA/J	ENSMUSG00210020063	pseudogene	Chr16:71908802-71909398 (+)
DBA/2J	ENSMUSG00185005117	pseudogene	Chr16:71847593-71848189 (+)
FVB/NJ	ENSMUSG00205015037	pseudogene	Chr16:71637241-71637837 (+)
JF1/MsJ	ENSUMUG00000014809	pseudogene	Chr16:72059491-72060087 (+)
LP/J	ENSMUSG00230020688	pseudogene	Chr16:74404225-74404821 (+)
NOD/ShiLtJ	ENSMUSG00190011610	pseudogene	Chr16:71824308-71824904 (+)
NZO/HlLtJ	ENSMUSG00225029682	pseudogene	Chr16:77639173-77639769 (+)
PWK/PhJ	ENSLUMG00010005372	pseudogene	Chr16:71707643-71708239 (+)
SPRET/EiJ	ENSMSPG00010015528	pseudogene	Chr16:72521537-72522136 (+)
WSB/EiJ	ENSIUOG00005017954	pseudogene	Chr16:71847362-71847958 (+)

Homology

• Gene Tree
  Gm49676
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm49676
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116698 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116698	Ensembl Gene Model | MGI Sequence Detail	597	C57BL/6J
transcript	ENSMUST00000232159	Ensembl | MGI Sequence Detail	597	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76