Gm49671 Pseudogene Detail

Summary

• Symbol
  Gm49671
• Name
  predicted gene, 49671

• Feature Type
  pseudogene
• IDs
  MGI:6215114
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:74403150-74403449 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215114	pseudogene	Chr16:74403150-74403449 (+)
129S1/SvImJ	ENSMUSG00200015900	pseudogene	Chr16:71288256-71288556 (+)
A/J	ENSMUSG00195001620	pseudogene	Chr16:71057731-71058031 (+)
AKR/J	ENSMUSG00220005538	pseudogene	Chr16:71237279-71237579 (+)
BALB/cJ	ENSMUSG00180001657	pseudogene	Chr16:71138879-71139179 (+)
C3H/HeJ	ENSMUSG00175009271	pseudogene	Chr16:71412228-71412528 (+)
C57BL/6NJ	ENSMUSG00215001705	pseudogene	Chr16:71247290-71247589 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012679	pseudogene	Chr16:71168377-71168677 (+)
CBA/J	ENSMUSG00210020020	pseudogene	Chr16:71367238-71367538 (+)
DBA/2J	ENSMUSG00185004550	pseudogene	Chr16:71303762-71304062 (+)
FVB/NJ	ENSMUSG00205011842	pseudogene	Chr16:71068308-71068608 (+)
JF1/MsJ	ENSUMUG00000015506	pseudogene	Chr16:71502278-71502578 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011804	pseudogene	Chr16:71282803-71283103 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010015189	pseudogene	Chr16:71968668-71968968 (+)
WSB/EiJ	ENSIUOG00005002413	pseudogene	Chr16:71308578-71308878 (+)

Homology

• Gene Tree
  Gm49671
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm49671
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000116663 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116663	Ensembl Gene Model | MGI Sequence Detail	300	C57BL/6J
transcript	ENSMUST00000232134	Ensembl | MGI Sequence Detail	300	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76