Gm49668 Gene Detail

Summary

• Symbol
  Gm49668
• Name
  predicted gene, 49668

• Feature Type
  lncRNA gene
• IDs
  MGI:6215110
  NCBI Gene: 115488793
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr17:15641750-15661227 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  686 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215110	lncRNA gene	Chr17:15627955-15661534 (-)
129S1/SvImJ	ENSMUSG00200039283	lncRNA gene	Chr17:11249778-11262942 (-)
A/J	ENSMUSG00195037482	lncRNA gene	Chr17:12007190-12020354 (-)
AKR/J	ENSMUSG00220026520	lncRNA gene	Chr17:11668429-11681593 (-)
BALB/cJ	ENSMUSG00180017863	lncRNA gene	Chr17:11247614-11260786 (-)
C3H/HeJ	ENSMUSG00175043574	lncRNA gene	Chr17:11141214-11154387 (-)
C57BL/6NJ	ENSMUSG00215042649	lncRNA gene	Chr17:11351026-11364194 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023348	lncRNA gene	Chr17:11672676-11685948 (-)
CBA/J	ENSMUSG00210041180	lncRNA gene	Chr17:10985349-10998518 (-)
DBA/2J	ENSMUSG00185042326	lncRNA gene	Chr17:12975825-12988988 (-)
FVB/NJ	ENSMUSG00205032194	lncRNA gene	Chr17:11661986-11675150 (-)
JF1/MsJ	ENSUMUG00000037063	lncRNA gene	Chr17:12546466-12559658 (-)
LP/J	ENSMUSG00230027815	lncRNA gene	Chr17:14374070-14387233 (-)
NOD/ShiLtJ	ENSMUSG00190042820	lncRNA gene	Chr17:11407882-11421055 (-)
NZO/HlLtJ	ENSMUSG00225048385	lncRNA gene	Chr17:16327657-16340819 (-)
PWK/PhJ	ENSLUMG00010021069	lncRNA gene	Chr17:11251425-11264627 (-)
SPRET/EiJ	ENSMSPG00010040390	lncRNA gene	Chr17:12554460-12567670 (-)
WSB/EiJ	ENSIUOG00005039772	lncRNA gene	Chr17:11998807-12011981 (-)

Homology

• Gene Tree
  Gm49668
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  4

• Ensembl
  ENSMUSG00000116718 (Evidence)
• NCBI Gene
  115488793

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116718	Ensembl Gene Model | MGI Sequence Detail	19478	C57BL/6J
transcript	ENSMUST00000231947	Ensembl | MGI Sequence Detail	1843	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49668:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146518	Chr17:15655113-15655129 (-)	6,106 bp
Tssr146517	Chr17:15655081-15655112 (-)	6,130 bp
Tssr146516	Chr17:15653591-15653599 (-)	7,632 bp
Tssr146515	Chr17:15653574-15653584 (-)	7,648 bp
Tssr146514	Chr17:15652471-15652482 (-)	8,750 bp