Gm49621 Pseudogene Detail

Summary

• Symbol
  Gm49621
• Name
  predicted gene, 49621

• Feature Type
  pseudogene
• IDs
  MGI:6215043
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:62932053-62932548 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215043	pseudogene	Chr16:62932053-62932548 (+)
129S1/SvImJ	ENSMUSG00200021367	pseudogene	Chr16:59918283-59918778 (+)
A/J	ENSMUSG00195025519	pseudogene	Chr16:59512293-59512788 (+)
AKR/J	ENSMUSG00220020150	pseudogene	Chr16:59977582-59978077 (+)
BALB/cJ	ENSMUSG00180025435	pseudogene	Chr16:59672226-59672721 (+)
C3H/HeJ	ENSMUSG00175018102	pseudogene	Chr16:59952356-59952851 (+)
C57BL/6NJ	ENSMUSG00215026054	pseudogene	Chr16:59756390-59756885 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014703	pseudogene	Chr16:59841033-59841502 (+)
CBA/J	ENSMUSG00210019673	pseudogene	Chr16:59925664-59926159 (+)
DBA/2J	ENSMUSG00185025826	pseudogene	Chr16:59849629-59850124 (+)
FVB/NJ	ENSMUSG00205010588	pseudogene	Chr16:59642411-59642906 (+)
JF1/MsJ	ENSUMUG00000028200	pseudogene	Chr16:60014346-60014815 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190007367	pseudogene	Chr16:59895832-59896327 (+)
NZO/HlLtJ	ENSMUSG00225036127	pseudogene	Chr16:65644302-65644797 (+)
PWK/PhJ	ENSLUMG00010012125	pseudogene	Chr16:59721582-59722051 (+)
SPRET/EiJ	ENSMSPG00010001707	pseudogene	Chr16:60403256-60403748 (+)
SPRET/EiJ	ENSMSPG00010041833	pseudogene	Chr7:93893322-93893603 (-)
WSB/EiJ	ENSIUOG00005009641	pseudogene	Chr16:59966072-59966567 (+)

Homology

• Gene Tree
  Gm49621
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116612 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116612	Ensembl Gene Model | MGI Sequence Detail	496	C57BL/6J
transcript	ENSMUST00000231788	Ensembl | MGI Sequence Detail	496	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;